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Journal Articles

A New Standard DNA Damage (SDD) data format

Schuemann, J.*; McNamara, A. L.*; Warmenhoven, J. W.*; Henthorn, N. T.*; Kirkby, K.*; Merchant, M. J.*; Ingram, S.*; Paganetti, H.*; Held, K. D.*; Ramos-Mendez, J.*; et al.

Radiation Research, 191(1), p.76 - 93, 2019/01

 Times Cited Count:47 Percentile:94.65(Biology)

We propose a new Standard DNA Damage (SDD) data format to unify the interface between the simulation of damage induction in DNA and the biological modelling of DNA repair processes, and introduce the effect of the environment (molecular oxygen or other compounds) as a flexible parameter. Such a standard greatly facilitates inter-model comparisons, providing an ideal environment to tease out model assumptions and identify persistent, underlying mechanisms. Through inter-model comparisons, this unified standard has the potential to greatly advance our understanding of the underlying mechanisms of radiation-induced DNA damage and the resulting observable biological effects when radiation parameters and/or environmental conditions change.

Journal Articles

Stratigraphy and AMS radiocarbon dates of cored sediments (IrBH-2) from the Irosin Caldera, the Philippines

Mirabueno, M. H. T.*; Torii, Masayuki*; Laguerta, E. P.*; Delos Reyes, P. J.*; Fujiki, Toshiyuki*; Bariso, E. B.*; Okuno, Mitsuru*; Nakamura, Toshio*; Danhara, Toru*; Kokubu, Yoko; et al.

Chigaku Zasshi, 123(5), p.751 - 760, 2014/10

Core drilling at site IRBH-2 within Irosin caldera, southern Luzon, reached 50 m. Systematic logging and documentation were done to describe the sediments. AMS $$^{14}$$C dates were obtained for plant fragments from the peaty layers. Lahars and fluvial deposits were the predominant deposits in the core sequence. The upper 12 m was comprised mostly by andesitic fluvial and minor lahars. Eight fallouts were intercalated with reworked sediments from depth interval of 20 to 50 m. The refractive index measurement of analyzed samples indicated that post-caldera eruptions generated andesite, dacite and minor rhyolite. The similarity in petrographic characteristics between the rhyolite fallout and the Irosin ignimbrite indicates that small-scale eruptions involving magma from the caldera event occurred during post-caldera stage.Young radiocarbon dates obtained from the peaty layers shows that volcaniclastic deposits in the upper levels were likely derived from the eruptions of Bulusan volcano.

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