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Omokawa, Marina*; Kimura, Hiroyuki*; Hatsukawa, Yuichi*; Kawashima, Hidekazu*; Tsukada, Kazuaki; Yagi, Yusuke*; Naito, Yuki*; Yasui, Hiroyuki*
Bioorganic & Medicinal Chemistry, 97, p.117557_1 - 117557_6, 2024/01
Times Cited Count:0 Percentile:0.00(Biochemistry & Molecular Biology)Suzuki, Masaaki*; Ito, Mari*; Hashidate, Ryuta; Takahashi, Keita; Yada, Hiroki; Takaya, Shigeru
2020 9th International Congress on Advanced Applied Informatics (IIAI-AAI 2020), p.797 - 801, 2021/07
Yang, Z. H.*; Kubota, Yuki*; Corsi, A.*; Yoshida, Kazuki; Sun, X.-X.*; Li, J. G.*; Kimura, Masaaki*; Michel, N.*; Ogata, Kazuyuki*; Yuan, C. X.*; et al.
Physical Review Letters, 126(8), p.082501_1 - 082501_8, 2021/02
Times Cited Count:52 Percentile:96.37(Physics, Multidisciplinary)A quasifree (,) experiment was performed to study the structure of the Borromean nucleus B, which had long been considered to have a neutron halo. By analyzing the momentum distributions and exclusive cross sections, we obtained the spectroscopic factors for and orbitals, and a surprisingly small percentage of 9(2)% was determined for . Our finding of such a small component and the halo features reported in prior experiments can be explained by the deformed relativistic Hartree-Bogoliubov theory in continuum, revealing a definite but not dominant neutron halo in B. The present work gives the smallest - or -orbital component among known nuclei exhibiting halo features and implies that the dominant occupation of or orbitals is not a prerequisite for the occurrence of a neutron halo.
Ino, Kohei*; Hernsdorf, A. W.*; Konno, Yuta*; Kozuka, Mariko*; Yanagawa, Katsunori*; Kato, Shingo*; Sunamura, Michinari*; Hirota, Akinari*; Togo, Yoko*; Ito, Kazumasa*; et al.
ISME Journal, 12(1), p.31 - 47, 2018/01
Times Cited Count:52 Percentile:90.22(Ecology)In this study, we found the dominance ofanaerobic methane-oxidizing archaea in groundwater enriched in sulfate and methane from a 300-m deep underground borehole in granitic rock.
Shand, C. M.*; Podolyk, Zs.*; Grska, M.*; Doornenbal, P.*; Obertelli, A.*; Nowacki, F.*; Otsuka, T.*; Sieja, K.*; Tostevin, J. A.*; Tsunoda, T.*; et al.
Physics Letters B, 773, p.492 - 497, 2017/10
Times Cited Count:27 Percentile:87.57(Astronomy & Astrophysics)Flavigny, F.*; Doornenbal, P.*; Obertelli, A.*; Delaroche, J.-P.*; Girod, M.*; Libert, J.*; Rodriguez, T. R.*; Authelet, G.*; Baba, Hidetada*; Calvet, D.*; et al.
Physical Review Letters, 118(24), p.242501_1 - 242501_6, 2017/06
Times Cited Count:40 Percentile:87.02(Physics, Multidisciplinary)Chen, S.*; Doornenbal, P.*; Obertelli, A.*; Rodriguez, T. R.*; Authelet, G.*; Baba, Hidetada*; Calvet, D.*; Chteau, F.*; Corsi, A.*; Delbart, A.*; et al.
Physical Review C, 95(4), p.041302_1 - 041302_6, 2017/04
Times Cited Count:31 Percentile:89.31(Physics, Nuclear)Paul, N.*; Corsi, A.*; Obertelli, A.*; Doornenbal, P.*; Authelet, G.*; Baba, Hidetada*; Bally, B.*; Bender, M.*; Calvet, D.*; Chteau, F.*; et al.
Physical Review Letters, 118(3), p.032501_1 - 032501_7, 2017/01
Times Cited Count:46 Percentile:88.88(Physics, Multidisciplinary)Ino, Kohei*; Konno, Yuta*; Kozuka, Mariko*; Hirota, Akinari*; Togo, Yoko*; Fukuda, Akari*; Komatsu, Daisuke*; Tsunogai, Urumu*; Tanabe, Akifumi*; Yamamoto, Satoshi*; et al.
Environmental Microbiology Reports (Internet), 8(2), p.285 - 294, 2016/04
Times Cited Count:29 Percentile:68.90(Environmental Sciences)To understand the subsurface biosphere, borehole investigation was conducted for 300-m deep granitic rocks at the Mizunami underground research laboratory, Japan. The initial biomass was the highest with the flourish of aerobic H-oxidizing Hydrogenophaga spp., whereas an uncultivated lineage of the phylum Nitrospirae became predominant after three years with decreasing biomass. The common occurrence of many species of Nitrospirae and Chlorobi phyla at the geographically distinct sites and the exclusive detection of their phylogenetically related environmental sequences from deep groundwaters and terrestrial hot springs, suggest that these bacteria are indigenous and potentially adapted to the deep terrestrial subsurface.
Fujimoto, Hirofumi*; Higuchi, Mariko; Koike, Manabu*; Ode, Hirotaka*; Pinak, M.; Kotulic Bunta, J.*; Nemoto, Toshiyuki*; Sakudo, Takashi*; Honda, Naoko*; Maekawa, Hideaki*; et al.
Journal of Computational Chemistry, 33(3), p.239 - 246, 2012/01
Times Cited Count:36 Percentile:67.15(Chemistry, Multidisciplinary)Lysine acetylation is one of the most common protein post transcriptional modifications. The acetylation effects of lysine residues on Ku protein were examined herein applying several computer simulation techniques. Acetylation of the lysine residues did not reduce the affinity between Ku and its substrate, DNA, in spite of the fact that the substitution of lysine with glutamine (KQ mutant) reduced the affinity of Ku for DNA, or the substitution of lysine with arginine (KR mutant) did not reduce it, as previously reported in experimental studies. These results suggest that the effects of in vivo acetylation may be overestimated when the KQ mutant is employed in mimicry of the acetylated protein.
Miyamura, Hiroko; Kureta, Masatoshi; Segawa, Mariko; Kubo, Jun*; Saito, Takafumi*; Suzuki, Yoshio; Takemiya, Hiroshi
Visualization of Mechanical Processes (Internet), 1(3), 8 Pages, 2011/10
The use of high frame rate neutron radiography has been proposed as a method for recording images of oil in a running car engine. However, it is difficult to capture the behavior of oil from such images, because the images are dark and blurry. Therefore, we attempt to overcome this problem using a multi-scale image processing technique, in which the oil regions are classified based on scale. This method can be used to focus attention on objects with a particular scale. In addition, we propose a technique by which to capture the time-dependent behavior of oil using spatio-temporal image analysis. Using these techniques, the region of interest can be determined and observed carefully.
Miyamura, Hiroko; Kureta, Masatoshi; Segawa, Mariko; Kubo, Jun*; Saito, Takafumi*; Suzuki, Yoshio; Takemiya, Hiroshi
Proceedings of 11th Asian Symposium on Visualization (ASV-11) (CD-ROM), 4 Pages, 2011/06
In this paper, we report that our image analysis technique, which has be proposed for analyzing large-scale and complex simulation and measurement experiment results in nuclear field was applied to the industrial problems. The Japan Atomic Energy Agency and Nissan Motor Co., Ltd. proposed a high-speed camera using neutron radiography, and developed the technology to capture the flow of oil in a car engine. However the recorded images are blurred, it is difficult to visualize and analyze the behavior of oil in detail. Therefore, we try to overcome this by using multi-scale analysis, which is an image processing technique on image emphasis. In addition, we present a spatio-temporal image analysis for capturing the behavior of oil that is not yet understood in detail. In this presentation, we discuss the effectiveness of our image analysis technique.
Kobayashi, Yasuhiko; Kikuchi, Masahiro; Todoriki, Setsuko*; Saito, Kimie*; Katsura, Yoko*; Kameya, Hiromi*; Ichikawa, Mariko*; Iizuka, Tomoko*; Chiba, Etsuko*; Ukai, Mitsuko*
Shokuhin Shosha, 45(1-2), p.26 - 33, 2010/09
Effect of -irradiation on sprouting and rooting of garlic was investigated. Sprouting and rooting of garlic were inhibited by irradiation of bulbs at 2 months after harvest with doses more than 30 Gy. Four weeks-later irradiation requires higher doses to complete sprouting/rooting inhibition.
Miyamura, Hiroko; Kureta, Masatoshi; Segawa, Mariko; Kubo, Jun*; Saito, Takafumi*; Suzuki, Yoshio; Takemiya, Hiroshi
Denki Gakkai Kenkyukai Shiryo, Sangyo Keisoku Seigyo Kenkyukai (IIC-10-73), p.7 - 12, 2010/03
An experiment is conducted to measure the water and oil in a metallic object by neutron radiography. In this approach, visualization of the oil in a rotating car engine at high speed is achieved by using the proposed high-speed camera. However, because the oil is mist and liquid, it is difficult to identify these conditions and to analyze them. Therefore, we try to identify the oil condition in the engine by employing a multi-scale analysis, which is an image processing technique.
Koarashi, Jun; Atarashi-Andoh, Mariko; Ishizuka, Shigehiro*; Miura, Satoru*; Saito, Takeshi*; Hirai, Keizo*
Global Change Biology, 15(3), p.631 - 642, 2009/03
Times Cited Count:44 Percentile:74.59(Biodiversity Conservation)Although it is well documented the possibility that global warming can lead to an acceleration of microbial decomposition of soil organic carbon (SOC), the magnitude and timing of this effect remains highly uncertain. The main reason is a lack of quantitative aspect of the heterogeneity in SOC biodegradability. To quantify the heterogeneity, we collected the soil and litter samples within a cool-temperate deciduous forest in Japan, separated chemically the samples into SOC fractions, determined their mean residence times (MRTs) based on the radiocarbon (C) measurements, and finally represented the soil as a complex of six SOC pools with different range of MRTs. Predicted response of the SOC pools to warming demonstrates that the rate of SOC loss from the fast-cycling SOC pool diminishes quickly because of the substrate availability; in contrast, the warming continues to accelerate SOC loss from slow-cycling pools with MRTs of 20-200 year over the next century.
Atarashi-Andoh, Mariko; Koarashi, Jun; Ishizuka, Shigehiro*; Saito, Takeshi*; Hirai, Keizo*
JAEA-Conf 2008-003, p.75 - 78, 2008/04
C-14 is an effective tracer in investigating the carbon dynamics in the environment. In this study, the measurements of C-14 in soil organic matter (SOM) in a deciduous forest were used to determine the turnover time and CO production rate from SOM. In addition, monthly measurements of carbon isotopic ratios in soil-respired CO and atmospheric CO were conducted to characterize the seasonal variation of the contribution of each CO source, such as SOM decomposition and root respiration.
Koarashi, Jun; Atarashi-Andoh, Mariko; Ishizuka, Shigehiro*; Saito, Takeshi*; Hirai, Keizo*; Miura, Satoru*
Proceedings of International Symposium on Application of a Closed Experimental System to Modeling of C Transfer in the Environment, p.72 - 76, 2008/00
Recent debate has emphasized that our capacity to predict the response of soil organic carbon (SOC) to climate change depends on a clear understanding of the heterogeneity in SOC biodegradability. We collected soil samples from the Appi forest meteorology research site dominated by Japanese beech, separated the soil samples into three SOC fractions with a chemical method, and determined their radiocarbon isotope ratios using an accelerator mass spectrometry. The radiocarbon signatures allow us to estimate their turnover times (TTs), quantifying the rates of SOC decomposition. According to the estimated TTs, the SOC was distinguished into six SOC pools with distinct TTs of several years to 1000 years. The annual SOC decomposition rate was summed up to 0.47 kgC m y, about a half of which was from the fastest-cycling pool (litter). Approximately 5% of SOC gave the over-millennium TTs, suggesting that this pool plays a role of a long-term carbon sequestration in the carbon cycle.
Higuchi, Mariko; Pinak, M.; Saito, Kimiaki
Hoken Butsuri, 42(2), p.166 - 173, 2007/06
The cluster damaged site on DNA consisting of 7,8-dihydro-8-oxoguanine (8oxoG) and apurinic/apyrimidinic (AP) site is one example of damage that inhibits enzymatic repair. The 2 nanosecond molecular dynamics simulation revealed that the effect of AP site was lager than it of 8oxoG in multiple damaged DNA. The multiple damaged DNA was bent mainly at AP site. Bending direction of multiple damaged DNA including AP site and 8oxoG was different from that at the lesion site of single 8oxoG damaged DNA. These changes may have an influence on the effectiveness of enzymatic repair.
Kamata, Yasuhiro*; Imai, Tsuyoshi*; Tatematsu, Yoshinori*; Watanabe, Osamu*; Minami, Ryutaro*; Saito, Teruo*; Sakamoto, Keishi; Kariya, Tsuyoshi*; Mitsunaka, Yoshika*; Machida, Norihito*; et al.
Fusion Science and Technology, 51(2T), p.412 - 414, 2007/02
Times Cited Count:0 Percentile:0.00(Nuclear Science & Technology)no abstracts in English
Imai, Tsuyoshi*; Tatematsu, Yoshinori*; Numakura, Tomoharu*; Sakamoto, Keishi; Minami, Ryutaro*; Watanabe, Osamu*; Kariya, Tsuyoshi*; Mitsunaka, Yoshika*; Kamata, Yasuhiro*; Machida, Norihito*; et al.
Fusion Science and Technology, 51(2T), p.208 - 212, 2007/02
Times Cited Count:9 Percentile:54.16(Nuclear Science & Technology)no abstracts in English