Data collection for dilute protein solutions via a neutron backscattering spectrometer

Tominaga, Taiki*; Nakagawa, Hiroshi; Sahara, Masae*; Oda, Takashi*; Inoue, Rintaro*; Sugiyama, Masaaki*

Life (Internet), 12(5), p.675_1 - 675_9, 2022/05

https://doi.org/10.3390/life12050675

The background scattering of sample cells suitable for aqueous protein solution samples, conducted with a neutron backscattering spectrometer, was evaluated. It was found that the scattering intensity of an aluminum sample cell coated with boehmite using DO was lower than that of a sample cell coated with regular water (HO). In addition, meticulous attention to cells with small individual weight differences and the positional reproducibility of the sample cell relative to the spectrometer neutron beam position enabled the accurate subtraction of the scattering profiles of the DO buffer and the sample container. Consequently, high quality information on protein dynamics could be extracted from dilute protein solutions.

Dynamics of proteins with different molecular structures under solution condition

Inoue, Rintaro*; Oda, Takashi*; Nakagawa, Hiroshi; Tominaga, Taiki*; Saio, Tomohide*; Kawakita, Yukinobu; Shimizu, Masahiro*; Okuda, Aya*; Morishima, Ken*; Sato, Nobuhiro*; et al.

Scientific Reports (Internet), 10, p.21678_1 - 21678_10, 2020/12

https://doi.org/10.1038/s41598-020-78311-4

Incoherent quasielastic neutron scattering (iQENS) is a fascinating technique for investigating the internal dynamics of protein. However, both low flux of neutron beam and absence of analytical procedure for extracting the internal dynamics from iQENS profile have been obstacles for studying it under physiological condition (in solution). Thanks to the recent development of neutron source, spectrometer and computational technique, they enable us to decouple internal dynamics, translational and rotational diffusions from the iQENS profile. The internal dynamics of two proteins: globular domain protein (GDP) and intrinsically disordered protein (IDP) in solution were studied. It was found that the average relaxation rate of IDP was larger than that of GDP. Through the detailed analyses on their internal dynamics, it was revealed that the fraction of mobile H atoms in IDP was much higher than that in GDP. Interestingly, the fraction of mobile H atoms was closely related to the fraction of H atoms on highly solvent exposed surfaces. The iQENS study presented that the internal dynamics were governed by the highly solvent exposed amino acid residues depending upon protein molecular architectures.

Nonhomologous end-joining repair plays a more important role than homologous recombination repair in defining radiosensitivity after exposure to high-LET radiation

Takahashi, Akihisa*; Kubo, Makoto*; Ma, H.*; Nakagawa, Akiko*; Yoshida, Yukari*; Isono, Mayu*; Kanai, Tatsuaki*; Ono, Tatsuya*; Furusawa, Yoshiya*; Funayama, Tomoo; et al.

Radiation Research, 182(3), p.338 - 344, 2014/09

https://doi.org/10.1667/RR13782.1

To clarify whether high-LET radiation inhibits all repair pathways or specifically one repair pathway, studies were designed to examine the effects of radiation with different LET values on DNA DSB repair and radiosensitivity. Embryonic fibroblasts bearing repair gene KO were exposed to X rays, carbon-, iron-, neon- and argon-ion beams. Cell survival was measured with colony-forming assays. The sensitization enhancement ratio (SER) values were calculated using the 10% survival dose of wild-type cells and repair-deficient cells. Cellular radiosensitivity was listed in descending order: double-KO cells NHEJ-KO cells HR-KO cells wild-type cells. Although HR-KO cells had an almost constant SER value, NHEJ-KO cells showed a high-SER value when compared to HR-KO cells, even with increasing LET values. These results suggest that with carbon-ion therapy, targeting NHEJ repair yields higher radiosensitivity than targeting homologous recombination repair.

Evaluation of protection factors of a breath-responsive-powered air-purifying respirator

Nakagawa, Masahiro; Nojima, Shun; Fujii, Katsutoshi; Shishido, Nobuhito; Sakai, Toshiya; Umehara, Takashi; Shimizu, Isamu

Hoken Butsuri, 47(3), p.189 - 193, 2012/10

https://doi.org/10.5453/jhps.47.189

It is essential to wear an air-purifying respirator in the radiation works in a contaminated atmosphere. A breath-responsive-powered air-purifying respirator (BR-PAPR) has been recently developed. However, no research has yet been conducted to determine the protection factor (PF) of the BR-PAPR in actual workplaces. In this study, the PFs of the BR-PAPR were measured by a man-test apparatus and compared with those of a non-powered full face mask. The PFs were measured under three different situations; normal wearing condition, clogging the filter and leaving a gap between the face and the mask. Under these situations, it was found that the PFs of the BR-PAPR are higher than those of the non-powered full face mask. PFs greater than 4000 were obtained for 95% of the subjects who wear the BR-PAPR, and PFs over 6667, the upper limit of the man-test apparatus, were obtained for 49% of them. The questionnaire survey was conducted for workers. The results showed that the workers feel a reduced burden when they wear the BR-PAPR. The results of this study showed high protection performance and operation efficiency of the BR-PAPR.

Identified charged hadron production in collisions at = 200 and 62.4 GeV

Adare, A.*; Afanasiev, S.*; Aidala, C.*; Ajitanand, N. N.*; Akiba, Yasuyuki*; Al-Bataineh, H.*; Alexander, J.*; Aoki, Kazuya*; Aphecetche, L.*; Armendariz, R.*; et al.

Physical Review C, 83(6), p.064903_1 - 064903_29, 2011/06

https://doi.org/10.1103/PhysRevC.83.064903

Transverse momentum distributions and yields for , and in collisions at = 200 and 62.4 GeV at midrapidity are measured by the PHENIX experiment at the RHIC. We present the inverse slope parameter, mean transverse momentum, and yield per unit rapidity at each energy, and compare them to other measurements at different collisions. We also present the scaling properties such as and scaling and discuss the mechanism of the particle production in collisions. The measured spectra are compared to next-to-leading order perturbative QCD calculations.

Technical development for IASCC irradiation experiments at the JMTR

Shibata, Akira; Nakano, Junichi; Omi, Masao; Kawamata, Kazuo; Saito, Takashi; Hayashi, Koji; Saito, Junichi; Nakagawa, Tetsuya; Tsukada, Takashi

Proceedings of 16th International Conference on Nuclear Engineering (ICONE-16) (CD-ROM), 8 Pages, 2008/05

Irradiation assisted stress corrosion cracking (IASCC) is considered to be one of the key issues in the aged Light Water Reactors. To simulate IASCC behavior by the in-pile or post-irradiation experiment, it is necessary to irradiate specimens up to a neutron fluence that is higher than the so-called IASCC threshold fluence. There are, however, some technical hurdles to be overcome for the experiments. The techniques assembling pre-irradiated specimens into a in-pile test capsule in a hot cell and the eveluation of material integrity of the capsule during a long term irradiation are necessary. To evaluate material integrity on capsules during a long term irradiation, tensile test and SSRT using specimens which was previously irradiated to 1.03.910 n/m were performed. In this paper, technical developments required for IASCC test, e.g. the development of assembling techniques for IASCC capsules and the evaluation of stainless steels which dosed high-fluence neutron were described.

Temperature dependence of magnetic moment orientation in CoZ-type hexaferrite estimated by high-temperature neutron diffraction

Takada, Yukio*; Nakagawa, Takashi*; Fukuta, Yasunari*; Tokunaga, Masatoshi*; Yamamoto, Takao*; Tachibana, Takeshi*; Kawano, Shinji*; Igawa, Naoki; Ishii, Yoshinobu

Japanese Journal of Applied Physics, 44(5A), p.3151 - 3156, 2005/05

https://doi.org/10.1143/JJAP.44.3151

We investigated the correlation between the thremomagnetic curve of CoZ-Type hexagonal barium ferrite, BaCoFeO and its magnetic moment direction. The thermomagnetic curve shows two significant magnetization slumps at 540K and 680K. High-temperature neutron diffraction experiment and Rietveld analyses indicate that temperature rise from 523 to 573K makes the magnetic moments turn to the c-axis from a direction parallel to the c-plane most significantly.The change in average orientation of the magnetic moments must be induced by the disappearence of the contribution of cobalt to magnetism in this temperature.

Japanese evaluated nuclear data library version 3 revision-3; JENDL-3.3

Shibata, Keiichi; Kawano, Toshihiko*; Nakagawa, Tsuneo; Iwamoto, Osamu; Katakura, Junichi; Fukahori, Tokio; Chiba, Satoshi; Hasegawa, Akira; Murata, Toru*; Matsunobu, Hiroyuki*; et al.

Journal of Nuclear Science and Technology, 39(11), p.1125 - 1136, 2002/11

https://doi.org/10.3327/jnst.39.1125

Evaluation for JENDL-3.3 has been performed by considering the accumulated feedback information and various benchmark tests of the previous library JENDL-3.2. The major problems of the JENDL-3.2 data were solved by the new library: overestimation of criticality values for thermal fission reactors was improved by the modifications of fission cross sections and fission neutron spectra for U; incorrect energy distributions of secondary neutrons from important heavy nuclides were replaced with statistical model calculations; the inconsistency between elemental and isotopic evaluations was removed for medium-heavy nuclides. Moreover, covariance data were provided for 20 nuclides. The reliability of JENDL-3.3 was investigated by the benchmark analyses on reactor and shielding performances. The results of the analyses indicate that JENDL-3.3 predicts various reactor and shielding characteristics better than JENDL-3.2.

Basic and clinical studies for application of epithermal neutron beam for neutron capture therapy

Nose, Tadao*; Matsumura, Akira*; Yamamoto, Tetsuya*; Shibata, Yasushi*; Yoshida, Fumiyo*; Akutsu, Hiroyoshi*; Yasuda, Susumu*; Matsushita, Akira*; Nakai, Kei*; Yamada, Takashi*; et al.

UTRCN-G-29, p.114 - 123, 2001/00

no abstracts in English

Computer program system for evaluation of FP nuclear data for JENDL (Smooth Part)

Nakagawa, Tsuneo; Watanabe, Takashi*; *

JAERI-Data/Code 97-050, 103 Pages, 1997/12

JAERI-Data-Code-97-050.pdf:2.73MB

no abstracts in English