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Journal Articles

The H-Invitational Database (H-InvDB); A Comprehensive annotation resource for human genes and transcripts

Yamasaki, Chisato*; Murakami, Katsuhiko*; Fujii, Yasuyuki*; Sato, Yoshiharu*; Harada, Erimi*; Takeda, Junichi*; Taniya, Takayuki*; Sakate, Ryuichi*; Kikugawa, Shingo*; Shimada, Makoto*; et al.

Nucleic Acids Research, 36(Database), p.D793 - D799, 2008/01

 Times Cited Count:51 Percentile:71.25(Biochemistry & Molecular Biology)

Here we report the new features and improvements in our latest release of the H-Invitational Database, a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of fulllength cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 protein-coding and 642 non-protein-coding loci; 858 transcribed loci overlapped with predicted pseudogenes.

Oral presentation

Current status of the 4SEASONS spectrometer at J-PARC

Kajimoto, Ryoichi; Yokoo, Tetsuya*; Nakajima, Kenji; Nakamura, Mitsutaka; Inamura, Yasuhiro; Soyama, Kazuhiko; Ino, Takashi*; Oyama, Kenji*; Sakai, Makiko; Aizawa, Kazuya; et al.

no journal, , 

4SEASONS is one of the day-one chopper spectrometers for the spallation neutron facility in Japan Proton Accelerator Research Complex (J-PARC). The spectrometer targets high-$$T_c$$ superconductors and related strongly correlated materials utilizing incident energies of 5-300 meV. 4SEASONS supplies high flux at a sample by moderating the resolution ($$Delta E/E_i = 5$$-6% at $$E = 0$$) and incorporating efficient neutron optic devices. A new Fermi chopper is designed to multiply the measurement efficiency by repetition rate multiplication (RRM). Recently, we have decided to enlarge the detector coverage by $$30^{circ}$$ in horizontal direction (with the maximum scattering angle being $$120^{circ}$$) to let the spectrometer have more flexibility. The designing of the vacuum scattering chamber has been almost completed. Examination of the 2.5m-$$^3$$He PSD on neutron beam and manufacturing of a prototype of a slit package of the new chopper are going on.

Oral presentation

Chopper spectrometer 4SEASONS for J-PARC

Kajimoto, Ryoichi; Yokoo, Tetsuya*; Nakajima, Kenji; Nakamura, Mitsutaka; Inamura, Yasuhiro; Maruyama, Ryuji; Soyama, Kazuhiko; Suzuya, Kentaro; Ino, Takashi*; Oyama, Kenji*; et al.

no journal, , 

no abstracts in English

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