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Journal Articles

Changes in molecular conformation and electronic structure of DNA under $$^{12}$$C ions based on first-principles calculations

Sekikawa, Takuya; Matsuya, Yusuke; Hwang, B.*; Ishizaka, Masato*; Kawai, Hiroyuki*; Ono, Yoshiaki*; Sato, Tatsuhiko; Kai, Takeshi

Nuclear Instruments and Methods in Physics Research B, 548, p.165231_1 - 165231_6, 2024/03

 Times Cited Count:0 Percentile:0.44(Instruments & Instrumentation)

One of the main causes of radiation effects on the human body is thought to be damage to DNA, which carries genetic information. However, it is not fully understood what kind of molecular structural changes DNA undergoes upon radiation damage. Since it has been reported that various types of DNA damage are formed when DNA is irradiated, our group has investigated the relationship between DNA damage and various patterns of radiation-induced ionization induced by radiation. Although we have so far analyzed DNA damage in a simple system using a rigid body model of DNA, more detailed calculations are required to analyze the molecular structural changes in DNA, which are considered to be important in considering the effects on the human body. In this study, we attempted to clarify the molecular conformational changes of DNA using OpenMX, a first-principles calculation software that can discuss electronic states based on molecular structures. Specifically, we calculated the most stable structure, band dispersion, and wave function of DNA under the assumption that one and two electrons are ionized by various radiation. In the presentation, we will discuss the relationship between the energy dependence of each incident radiation type and the molecular conformational change of DNA. In addition, the radiation-induced changes in the basic physical properties of DNA (corresponding to the initial stage of DNA damage) will be discussed from the viewpoints of both radiation physics and solid state physics.

Journal Articles

Development of a model for evaluating the luminescence intensity of phosphors based on the PHITS track-structure simulation

Hirata, Yuho; Kai, Takeshi; Ogawa, Tatsuhiko; Matsuya, Yusuke; Sato, Tatsuhiko

Nuclear Instruments and Methods in Physics Research B, 547, p.165183_1 - 165183_7, 2024/02

 Times Cited Count:0 Percentile:0.02(Instruments & Instrumentation)

The luminescence efficiency of the phosphors for swift ions is known to decrease because of the quenching effects. To obtain the precise dose distributions using phosphor detectors, understanding the mechanisms of quenching effects is mandatory. Here, we developed a new model for estimating the luminescence intensity of phosphors based on the track-structure modes for arbitrary materials implemented in PHITS. The developed model enabled the simulation of the quenching effects of the BaFBr detector and was verified by comparing the results to the corresponding measured data. The present model is expected to contribute to developing phosphor detectors worldwide.

Journal Articles

System of radiological protection; Towards a consistent framework on earth and in space

R$"u$hm, W.*; Ban, Nobuhiko*; Chen, J.*; Li, C.*; Dobynde, M.*; Durante, M.*; El-Jaby, S.*; Komiyama, Tatsuto*; Ozasa, Kotaro*; Sato, Tatsuhiko; et al.

Journal of Medical Physics - Zeitschrift f$"u$r medizinische Physik -, 10 Pages, 2024/00

The International Commission on Radiological Protection (ICRP) provides independent recommendations on radiological protection for the public benefit. For more than 90 years, the ICRP System of Radiological Protection has been guiding the development and implementation of national and international standards and regulations on radiological protection. In 2019, ICRP established Task Group (TG) 115 to address a broader range of topics related to dose and risk assessment for radiological protection of astronauts. This paper gives an overview of the System of Radiological Protection and a brief summary of ICRP's work on radiological protection of astronauts.

Journal Articles

Atmospheric ionizations by solar X-rays, solar protons, and radiation belt electrons in September 2017 space weather event

Murase, Kiyoka*; Kataoka, Ryuho*; Nishiyama, Takanori*; Sato, Kaoru*; Tsutsumi, Masaki*; Tanaka, Yoshimasa*; Ogawa, Yasunobu*; Sato, Tatsuhiko

Space Weather, 21(12), p.e2023SW003651_1 - e2023SW003651_11, 2023/12

 Times Cited Count:0 Percentile:0.01(Astronomy & Astrophysics)

Comprehensive understandings of their global impact on the atmosphere require whole pictures of spatio-temporal distributions of the ionization due to them. We estimate the altitude profiles of the ionization rate during the space weather event occurred in September 2017 by using the Particle and Heavy Ion Transport code System (PHITS) with input of the particle fluxes obtained by satellites. The estimates are then compared with measurements of the ionization altitude, ionization intensity, and electron density by the radars in the polar region such as the PANSY radar at Syowa Station and the EISCAT in Tromso, Norway. We conclude that the PHITS simulation results reproduce those ionizations measured by ground-based instruments with inputs of observed ionization sources by satellites within a factor of 2.

Journal Articles

Sharing the latest science with all people; Development and promotion of the PHITS code

Sato, Tatsuhiko

Oyo Butsuri, 92(11), p.684 - 687, 2023/11

Development and promotion of the PHITS code will be introduced.

Journal Articles

Fetal and maternal atomic bomb survivor dosimetry using the J45 pregnant female phantom series; Considerations of the kneeling and lying posture with comparisons to the DS02 system

Domal, S. J.*; Correa-Alfonso, C. M.*; Paulbeck, C. J.*; Griffin, K. T.*; Sato, Tatsuhiko; Funamoto, Sachiyo*; Cullings, H. M.*; Egbert, S. D.*; Endo, Akira; Hertel, N. E.*; et al.

Health Physics, 125(4), p.245 - 259, 2023/10

 Times Cited Count:0 Percentile:0.01(Environmental Sciences)

The RERF Working Group on Organ Dose (WGOD) has established the J45 (Japan 1945) series of high-resolution voxel phantoms, which were derived from the UF/NCI series of hybrid phantoms and scaled to match mid-1940s Japanese body morphometries. In this present study, we present the J45 pregnant female phantoms in both a kneeling and lying posture, and assess the dosimetric impact of these more anatomically realistic survivor models in comparisons to current organ doses given by the DS02 system. For the kneeling phantoms facing the bomb hypocenter, organ doses from bomb source photon spectra were shown to be overestimated by the DS02 system by up to a factor of 1.45 for certain fetal organs and up to a factor of 1.17 for maternal organs. For lying phantoms with their feet in the direction of the hypocenter, fetal organ doses from bomb source photon spectra were underestimated by the DS02 system by factors as low as 0.77 while maternal organ doses were overestimated by up to a factor of 1.38. Results from this study highlight the degree to which the existing DS02 system can differ from organ dosimetry based upon 3D radiation transport simulations using more anatomically realistic models of those survivors exposed during pregnancy while in a kneeling or lying position.

Journal Articles

Development of an electron track-structure mode for arbitrary semiconductor materials in PHITS

Hirata, Yuho; Kai, Takeshi; Ogawa, Tatsuhiko; Matsuya, Yusuke*; Sato, Tatsuhiko

Japanese Journal of Applied Physics, 62(10), p.106001_1 - 106001_6, 2023/10

 Times Cited Count:2 Percentile:75.57(Physics, Applied)

Optimization of semiconductor detector design requires theoretical analysis of the process of radiation conversion to carriers (excited electrons) in semiconductor materials. We, therefore, developed an electron track-structure code that can trace an incident electron trajectory down to a few eV and simulate many excited electron productions in semiconductors, named ETSART, and implemented it into PHITS. The accuracy of ETSART was validated by comparing calculated electron ranges in semiconductor materials with the corresponding data recommended in ICRU Report 37 and obtained from another simulation code. The average energy required to produce a single excited electron (epsilon value) is an important value that describes the characteristics of semiconductor detectors. Using ETSART, we computed the epsilon values in various semiconductors and found that the calculated epsilon values cannot be fitted well with a linear model of the band-gap energy. ETSART is expected to be useful for initial and mechanistic evaluations of electron-hole generation in undiscovered materials.

Journal Articles

A Terrestrial SER Estimation Methodology Based on Simulation Coupled With One-Time Neutron Irradiation Testing

Abe, Shinichiro; Hashimoto, Masanori*; Liao, W.*; Kato, Takashi*; Asai, Hiroaki*; Shimbo, Kenichi*; Matsuyama, Hideya*; Sato, Tatsuhiko; Kobayashi, Kazutoshi*; Watanabe, Yukinobu*

IEEE Transactions on Nuclear Science, 70(8, Part 1), p.1652 - 1657, 2023/08

 Times Cited Count:0 Percentile:0.01(Engineering, Electrical & Electronic)

Single event upsets (SEUs) caused by neutrons is a reliability problem for microelectronic devices in the terrestrial environment. Acceleration tests using white neutron beam provide realistic soft error rates (SERs), but only a few facilities can provide white neutron beam in the world. If single-source irradiation applicable to diverse neutron source can be utilized for the evaluation of the SER in the terrestrial environment, it contributes to solve the shortage of beam time. In this study, we investigated the feasibility of the SER estimation in the terrestrial environment by any one of these measured data with the SEU cross sections obtained by PHITS simulation. It was found that the SERs estimated by our proposed method are within a factor of 2.7 of that estimated by the Weibull function. We also investigated the effect of simplification which reduce the computational cost in simulation to the SER estimation.

Journal Articles

Fetal atomic bomb survivor dosimetry using the J45 series of pregnant female phantoms with realistic survivor exposure scenarios; Comparisons to dose estimates in the DS02 system

Paulbeck, C. J.*; Sato, Tatsuhiko; Funamoto, Sachiyo*; Lee, C.*; Griffin, K. T.*; Cullings, H. M.*; Egbert, S. D.*; Endo, Akira; Hertel, N. E.*; Bolch, W. E.*

Radiation and Environmental Biophysics, 62(3), p.317 - 329, 2023/08

 Times Cited Count:0 Percentile:0.01(Biology)

In our prior study [Radiat Res 192, 538-561 (2019)], we presented a new J45 (Japanese 1945) series of high-resolution phantoms of the adult pregnant female at 8-week, 15-week, 25-week, and 38-week post-conception. In this present study, we extend this work using realistic angular fluences from the DS02 system for up to nine different radiation categories and five shielding conditions. General findings are that the current DS02 fetal dose surrogate overestimates values of fetal organ dose seen in the J45 phantoms towards the cranial end of the fetus, especially in the later stages of pregnancy. This work supports our previous findings that the J45 pregnant female phantom series offers significate opportunities for gestational age-dependent assessment of fetal organ dose without the need to invoke the uterine wall as a fetal organ surrogate.

Journal Articles

Improvement of the hybrid approach between Monte Carlo simulation and analytical function for calculating microdosimetric probability densities in macroscopic matter

Sato, Tatsuhiko; Matsuya, Yusuke*; Ogawa, Tatsuhiko; Kai, Takeshi; Hirata, Yuho; Tsuda, Shuichi; Parisi, A.*

Physics in Medicine & Biology, 68(15), p.155005_1 - 155005_15, 2023/07

 Times Cited Count:2 Percentile:84.52(Engineering, Biomedical)

In this study, we improved the microdosimetric function implemented in PHITS using the latest track-structure simulation codes. The improved function is capable of calculating the probability densities of not only the conventional microdosimetric quantities such as lineal energy but also the numbers of ionization events occurred in a target site, the so-called ionization cluster size distribution, for arbitrary site diameters from 3 nm to 1 um. As a new application of the improved function, we calculated the relative biological effectiveness of the single-strand break and double-strand break yields for proton irradiations using the updated PHITS coupled with the simplified DNA damage estimation model, and confirmed its equivalence in accuracy and its superiority in computational time compared to our previously proposed method based on the track-structure simulation.

Journal Articles

Modelling oxygen effects on the in- and out-of-field radiosensitivity of cells exposed to intensity-modulated radiation fields

Matsuya, Yusuke; McMahon, S. J.*; Butterworth, K. T.*; Yachi, Yoshie*; Saga, Ryo*; Sato, Tatsuhiko; Prise, K. M.*

Physics in Medicine & Biology, 68(9), p.095008_1 - 095008_12, 2023/04

 Times Cited Count:1 Percentile:65.01(Engineering, Biomedical)

Hypoxia induces radioresistance in tumors, leading to malignant progression in intensity-modulated radiation therapy. To date, it has been shown that intercellular signalling between cells positioned inside and outside radiation field impacts on cellular radiosensitivity under hypoxia and normoxia. However, the mechanistic role of intercellular communication in hypoxia remains to be fully understood. In this study, we modelled the cell-killing effects of intercellular signalling in hypoxia to better understand the underlying mechanisms of response. We used the oxygen enhancement ratio (OER) given from early DSB yields and modelled the in- and out-of-field radiosensitivity. As a result, the model analysis provides an mechanistical interpretation that the probability of hits for releasing cell-killing signals is dependent on oxygen. Our data also suggested that the field-type independent OER value, which can be given by uniform-field exposure, can be applied when predicting both in- and out-of-field radiosensitivity. These results would contribute to more precise understanding of intercellular signalling under heterogeneous exposure to intensity-modulated radiation fields.

Journal Articles

Comparison of dose and risk estimates between ISS Partner Agencies for a 30-day Lunar Mission

Shavers, M. R.*; Semones, E. J.*; Shurshakov, V.*; Dobynde, M.*; Sato, Tatsuhiko; Komiyama, Tatsuto*; Tomi, L.*; Chen, J.*; El-Jaby, S.*; Straube, U.*; et al.

Journal of Medical Physics - Zeitschrift f$"u$r medizinische Physik -, 13 Pages, 2023/00

The Partner Agencies of the International Space Station (ISS) present an intracomparison of the ionizing radiation absorbed dose and risk quantities used to characterize example mission lunar space. The results and the work itself provide insights to the level of agreement with which space agencies can perform organ dosimetry and calculate effective dose. This work was performed in collaboration with the advisory and guidance efforts of the International Commission on Radiological Protection (ICRP) Task Group 115 and will be presented in an ICRP Report

Journal Articles

Experimental and computational verifications of the dose calculation accuracy of PHITS for high-energy photon beam therapy

Kuga, Naoya*; Shiiba, Takuro*; Sato, Tatsuhiko; Hashimoto, Shintaro; Kuroiwa, Yasuyoshi*

Journal of Nuclear Science and Technology, 10 Pages, 2023/00

 Times Cited Count:1 Percentile:72.91(Nuclear Science & Technology)

This study aims to verify the accuracy of PHITS in terms of photon and electron transport and provide essential data for its application in clinical dosimetry in high-energy photon beam therapy. Percentage depth dose (PDD), beam profiles, and output factor (OPF) in a water phantom with various field sizes created by a Clinac 21EX linear accelerator were measured using an ionization chamber. Experimental setups were precisely reproduced by PHITS version 3.24, and the percentage differences (%Diff) between the measured and calculated data were evaluated. The average %Diff of PDDs obtained from PHITS and measurement were within 10% and 2% in the build-up and fall-off regions, respectively. For beam profiles, the average %Diff in the plateau region was within 3%; the differences between the calculated and measured distances from the central axis to 50% dose level were within 2 mm. These differences were lower than their tolerance levels. The consistency between the PHITS and EGSnrc was better; their %Diff was within 1% in most cases. The concurrence between the PHITS and measurement shown in this study demonstrates the potential clinical application of PHITS in high-energy photon beam therapy, given its similar dose calculation accuracy compared with EGSnrc.

Journal Articles

Recent improvements of the Particle and Heavy Ion Transport code System; PHITS version 3.33

Sato, Tatsuhiko; Iwamoto, Yosuke; Hashimoto, Shintaro; Ogawa, Tatsuhiko; Furuta, Takuya; Abe, Shinichiro; Kai, Takeshi; Matsuya, Yusuke; Matsuda, Norihiro; Hirata, Yuho; et al.

Journal of Nuclear Science and Technology, 9 Pages, 2023/00

 Times Cited Count:5 Percentile:98.08(Nuclear Science & Technology)

The Particle and Heavy Ion Transport code System (PHITS) is a general-purpose Monte Carlo radiation transport code that can simulate the behavior of most particle species with energies up to 1 TeV (per nucleon for ions). Its new version, PHITS3.31, was recently developed and released to the public. In the new version, the compatibility with high-energy nuclear data libraries and the algorithm of the track-structure modes have been improved. In this paper, we summarize the upgraded features of PHITS3.31 with respect to the physics models, utility functions, and application software introduced since the release of PHITS3.02 in 2017.

Journal Articles

A Step-by-step simulation code for estimating yields of water radiolysis species based on electron track-structure mode in the PHITS code

Matsuya, Yusuke; Yoshii, Yuji*; Kusumoto, Tamon*; Akamatsu, Ken*; Hirata, Yuho; Sato, Tatsuhiko; Kai, Takeshi

Physics in Medicine & Biology, 19 Pages, 2023/00

 Times Cited Count:0 Percentile:0.05(Engineering, Biomedical)

Time-dependent yields of chemical products resulted in water radiolysis play a great role in evaluating DNA damage response after exposure to ionizing radiation. Particle and Heavy Ion Transport code System (PHITS) is a general-purpose Monte Carlo simulation code for radiation transport, which allows to determine several atomic interactions such as ionizations and electronic excitations as physical stage. However, a chemical code for simulating products of water radiolysis does not exist in the PHITS package. Here, we developed a chemical simulation code dedicated for the PHITS code, hereafter called PHITS-Chem code, which enables calculating G values of water radiolysis species (OH radical, e$$_{aq}$$$$^{-}$$, H$$_{2}$$, H$$_{2}$$O$$_{2}$$ etc) by electron beams. The estimated G values during 1 $$mu$$s are in agreement with the experimental ones and other simulations. This PHITS-Chem code enables simulating the dynamics in the presence of OH radical scavenger, and is useful for evaluating contributions of direct and indirect effects on DNA damage induction. This code will be included and be available in the future version of PHITS.

Journal Articles

Development of DynamicMC for PHITS Monte Carlo package

Watabe, Hiroshi*; Sato, Tatsuhiko; Yu, K. N.*; Zivkovic, M.*; Krstic, D.*; Nikezic, D.*; Kim, K. M.*; Yamaya, Taiga*; Kawachi, Naoki*; Tanaka, Hiroki*; et al.

Radiation Protection Dosimetry, 13 Pages, 2023/00

 Times Cited Count:0 Percentile:0.01(Environmental Sciences)

Previously, we have developed DynamicMC for modelling relative movement of ORNL phantom in a radiation field for MCNP. Using this software, 3-dimensional dose distributions in a phantom irradiated by a certain mono-energetic source can be deduced through its graphical user interface (GUI). In this study, we extended DynamicMC to be used in combination with the PHITS by providing it with a higher flexibility for dynamic movement for a less sophisticated anthropomorphic phantom. We anticipate that the present work and the developed open-source tools will be in the interest of nuclear radiation physics community for research and teaching purposes.

Journal Articles

Local environmental effects on cosmic ray observations at Syowa Station in the Antarctic; PARMA-based snow cover correction for neutrons and machine learning approach for neutrons and muons

Kataoka, Ryuho*; Sato, Tatsuhiko; Kato, Chihiro*; Kadokura, Akira*; Kozai, Masayoshi*; Miyake, Shoko*; Murase, Kiyoka*; Yoshida, Rihito*; Tomikawa, Yoshihiro*; Munakata, Kazuoki*

Journal of Space Weather and Space Climate (Internet), 12, p.37_1 - 37_11, 2022/11

 Times Cited Count:1 Percentile:22.72(Astronomy & Astrophysics)

Solar modulation of galactic cosmic rays around the solar minimum in 2019-2020 looks different in the secondary neutrons and muons observed at the ground. To compare the solar modulation of primary cosmic rays in detail, we have to remove the possible seasonal variations caused by the atmosphere and surrounding environment. As such surrounding environment effects, we evaluate the snow cover effect on neutron count rate and the atmospheric temperature effect on muon count rate both simultaneously observed at Syowa Station in the Antarctic (69.01$$^{circ}$$ S, 39.59$$^{circ}$$ E). The corrected muon count rate starts decreasing in late 2019, earlier than the corrected neutron count rate which starts decreasing in early 2020, possibly indicating the rigidity dependent solar modulation in the heliosphere.

Journal Articles

Development of a method for calculating effective displacement damage doses in semiconductors and applications to space field

Iwamoto, Yosuke; Sato, Tatsuhiko

PLOS ONE (Internet), 17(11), p.e0276364_1 - e0276364_16, 2022/11

 Times Cited Count:2 Percentile:31.61(Multidisciplinary Sciences)

The displacement damage dose (DDD) has been used as an index to determine the lifetime of semiconductor devices used in space radiation environments. Recently, a new index, effective DDD, has been proposed, which takes into account the defect generation efficiency of materials obtained from molecular dynamics simulations. In this study, we developed a method to calculate both conventional and effective DDD for typical semiconductor materials such as SiC, InAs, GaAs, and GaN in the PHITS code. As a result, in the arsenic compounds InAs and GaAs, the number of defects increases due to amorphization and the effective DDD is larger than the conventional DDD, while in SiC the relationship is reversed due to defect recombination. The improved PHITS can be used to calculate the effective DDD of semiconductors in cosmic ray environments, and PHITS can make a significant contribution to the evaluation of radiation damage of new semiconductor devices in space.

Journal Articles

Application of a simple DNA damage model developed for electrons to proton irradiation

Matsuya, Yusuke; Kai, Takeshi; Parisi, A.*; Yoshii, Yuji*; Sato, Tatsuhiko

Physics in Medicine & Biology, 67(21), p.215017_1 - 215017_13, 2022/11

 Times Cited Count:5 Percentile:78.03(Engineering, Biomedical)

Proton beam therapy allows to irradiate tumor volumes with reduced side effects on normal tissues with respect to X-ray radiotherapy. Biological effects such as cell killing after proton beam irradiations depend on the proton kinetic energy, which is intrinsically related in the early DNA damage induction. As such, the estimation of DNA damage yields based on Monte Carlo simulations is a research topic of worldwide interest. In this study, we investigate the possibility of applying a simple model developed for electron to proton without any modification. The yields of single-strand breaks (SSB), double-strand breaks (DSB) and the complex DSB were assessed as a function of the proton kinetic energy. The PHITS-based estimation accurately reproduced the experimental and simulated yields of various DNA damage types induced by protons with linear energy transfer (LET) up to about 30 keV/$$mu$$m. These results suggest that current DNA damage model implemented in PHITS is sufficient for estimating DNA lesion yields induced after protons irradiation except for lower energies than MeV.

Journal Articles

Implementation of the electron track-structure mode for silicon into PHITS for investigating the radiation effects in semiconductor devices

Hirata, Yuho; Kai, Takeshi; Ogawa, Tatsuhiko; Matsuya, Yusuke; Sato, Tatsuhiko

Japanese Journal of Applied Physics, 61(10), p.106004_1 - 106004_6, 2022/10

 Times Cited Count:5 Percentile:67.2(Physics, Applied)

Some radiation effects such as pulse-height defects and soft errors can cause problems in silicon (Si) devices. Local energy deposition in microscopic scales is essential information to elucidate the mechanism of these radiation effects. We, therefore, developed an electron track-structure model, which can simulate local energy deposition down to nano-scales, dedicated to Si and implemented it into PHITS. Then, we verified the accuracy of our developed model by comparing the ranges and depth-dose distributions of electrons obtained from this study with the corresponding experimental values and other simulated results. As an application of the model, we calculated the mean energies required to create an electron-hole pair, the so-called epsilon value. We found that the threshold energy for generating secondary electrons reproducing the epsilon value is 2.75 eV, consistent with the corresponding data deduced from past theoretical and computational studies. Since the magnitudes of the radiation effects on Si devices largely depend on the epsilon value, the developed code is expected to contribute to precisely understanding the mechanisms of pulse-height defects and semiconductor soft errors.

529 (Records 1-20 displayed on this page)