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JAEA Reports

User guide of AVS/ITBL for numerical environmental system

Suzuki, Yoshio; Matsumoto, Nobuko*; Yamagishi, Nobuhiro*; Arakawa, Takuya*; Kuraishi, Hideaki*

JAERI-Data/Code 2004-013, 163 Pages, 2005/02

JAERI-Data-Code-2004-013.pdf:33.81MB

The Center for Promotion of Computational Science and Engineering of the Japan Atomic Energy Research Institute has carried out the ITBL (Information-Technology Based Laboratory) project which is one of e-Japan priority policy programs. AVS/ITBL is the visualization tool which has been developed aiming at realizing the efficient visualization in the ITBL environment. This visualization tool is one of the tools of ITBL infrastructure software and operates in cooperation with AVS/Express. In this paper, utilization of AVS/ITBL to the numerical environmental system, which is one of the applications in ITBL project, is presented. And the outline of the operation in this utilization is indicated.

Journal Articles

Research and development of visualization tools on ITBL system infrastructure

Suzuki, Yoshio; Matsumoto, Nobuko*; Sai, Kazunori*; Yamagishi, Nobuhiro*

Keisan Kogaku Koenkai Rombunshu, 9(2), p.613 - 616, 2004/05

no abstracts in English

Journal Articles

Implementation of a resource handing environment for distributed applications on ITBL (IT-Based Laboratory)

Imamura, Toshiyuki; Hasegawa, Yukihiro*; Yamagishi, Nobuhiro*; Takemiya, Hiroshi*

Keisan Kogaku Koenkai Rombunshu, 8(2), p.793 - 796, 2003/05

no abstracts in English

Journal Articles

Parallel molecular-dynamics simulation on ITBL

Shimizu, Futoshi; Kadoyoshi, Tomoko; Kaburaki, Hideo; Yamagishi, Nobuhiro*; Hasegawa, Yukihiro*; Higuchi, Kenji

Keisan Kogaku Koenkai Rombunshu, 8(2), p.801 - 804, 2003/05

no abstracts in English

Journal Articles

Application of ITBL basic software for virtual organizations

Higuchi, Kenji; Otani, Takayuki; Hasegawa, Yukihiro*; Suzuki, Yoshio; Yamagishi, Nobuhiro*; Kimura, Kazuyuki*; Maesako, Hiroshi*; Fukuda, Masahiro; Yagawa, Genki

Keisan Kogaku Koenkai Rombunshu, 8(2), p.797 - 800, 2003/05

no abstracts in English

Journal Articles

Development of multiple job execution and visualization system on ITBL system infrastructure software and its utilization for parametric studies in environmental modeling

Suzuki, Yoshio; Matsumoto, Nobuko*; Yamagishi, Nobuhiro*; Higuchi, Kenji; Otani, Takayuki; Nagai, Haruyasu; Terada, Hiroaki; Furuno, Akiko; Chino, Masamichi; Kobayashi, Takuya

Computational Science - ICCS 2003, International Conference Saint Petersburg Russian Federation, Melbourne Australia, June 2-4, 2003 Proceedings, p.120 - 129, 2003/00

Information-Technology Based Laboratory (ITBL) project has been propelled as one of e-Japan priority policy programs. The purposes of the project are to share intellectual resources such as remote computers, programs and data in universities and institutes and to support cooperative studies among researchers, building a virtual research environment, ITBL. Japan Atomic Energy Research Institute (JAERI) has been working on installation and management of hardware and development of infrastructure software and applications. As application software, researches on quantum bioinformatics and environmental sciences are carried out. This paper presents utilization of ITBL system infra-structure software for 'Numerical Environment System' which is developed for environmental studies. More effective job executions and visualization are ex-pected by using Task Mapping Editor (TME) and AVS/ITBL, which are tools developed as infrastructure software.

Journal Articles

Grid computing supporting system on ITBL project

Higuchi, Kenji; Imamura, Toshiyuki*; Suzuki, Yoshio; Shimizu, Futoshi; Machida, Masahiko; Otani, Takayuki; Hasegawa, Yukihiro*; Yamagishi, Nobuhiro*; Kimura, Kazuyuki*; Aoyagi, Tetsuo; et al.

Lecture Notes in Computer Science 2858, p.245 - 257, 2003/00

Prototype of the middleware for Grid project promoted by national institutes in Japan has been developed. Key technologies that are indispensable for construction of virtual organization were already implemented onto the prototype of middleware and examined in practical computer/network system from a view point of availability. In addition several kinds of scientific applications are being executed on the prototype system. It seems that successful result in the implementation of those technologies such as security infrastructure, component programming and collaborative visualization in practical computer/network systems means significant progress in Science Grid in Japan.

Journal Articles

A Visual resource integration environment for distributed applications on the ITBL system

Imamura, Toshiyuki*; Yamagishi, Nobuhiro*; Takemiya, Hiroshi*; Hasegawa, Yukihiro*; Higuchi, Kenji; Nakajima, Norihiro

Lecture Notes in Computer Science 2858, p.258 - 268, 2003/00

no abstracts in English

Journal Articles

MPI-2 support in heterogeneous computing environment using an SCore cluster system

Tsujita, Yuichi*; Imamura, Toshiyuki*; Yamagishi, Nobuhiro*; Takemiya, Hiroshi*

Parallel and Distributed Processing and Applications (International Symposium, ISPA 2003), p.139 - 144, 2003/00

An MPI library for heterogeneous computing environment, Stampi, has been implemented on an SCore cluster system to enable dynamic process creation defined in MPI-2 and MPI communication among multiple clusters. Objective of this implementation is realization of heterogeneous computing environment with an SCore PC cluster and other machines. Through performance measurement, sufficient performance has been achieved and effectiveness of our flexible implementation has been confirmed.

Journal Articles

Development of a virtual research environment in ITBL project

Higuchi, Kenji; Otani, Takayuki; Hasegawa, Yukihiro*; Suzuki, Yoshio; Yamagishi, Nobuhiro*; Kimura, Kazuyuki*; Aoyagi, Tetsuo; Nakajima, Norihiro; Fukuda, Masahiro; Imamura, Toshiyuki*; et al.

Proceedings of International Conference on Supercomputing in Nuclear Applications (SNA 2003) (CD-ROM), 11 Pages, 2003/00

An experimental application of Grid computing was executed in ITBL project promoted by six member institutes of MEXT. Key technologies that are indispensable for construction of virtual organization were implemented onto ITBL Middleware and examined in the experiment from a view point of availability. It seems that successful result in the implementation and examination of those technologies such as security infrastructure, component programming and collaborative visualization in practical computer/network systems means significant progress in Science Grid in Japan.

Journal Articles

Evaluation of communication performance among SCore cluster systems via VPN using MPI communication library, Stampi

Tsujita, Yuichi; Yamagishi, Nobuhiro*; Kimura, Kazuyuki*; Otani, Takayuki; Tsuruoka, Nobuhiko*; Fujita, Naoyuki*

Joho Shori Gakkai Kenkyu Hokoku 2002-HPC-92, p.7 - 12, 2002/10

SCore system has been developed to provide flat computing infrastructure for parallel computing without awareness of each compute host in a PC cluster system. An SCore cluster system can be handled as a single computer. MPICH-SCore, which is an MPI library in SCore, is not available across multiple SCore cluster systems as well as multiple platforms. We have implemented an MPI communication library, Stampi in SCore cluster system to enable MPI communication between SCore cluster systems and measured communication performance of the library using SCore cluster systems.

Journal Articles

Development of distributed parallel-I/O library: Stampi-I/O

Tsujita, Yuichi; Imamura, Toshiyuki; Takemiya, Hiroshi*; Yamagishi, Nobuhiro*

Keisan Kogaku Koenkai Rombunshu, 7(1), p.159 - 162, 2002/05

no abstracts in English

Journal Articles

TME: A Distributed resource handling tool

Imamura, Toshiyuki; Hasegawa, Yukihiro*; Yamagishi, Nobuhiro*; Takemiya, Hiroshi*

Recent Advances in Computational Science & Engineering, p.789 - 792, 2002/00

no abstracts in English

Journal Articles

Stampi-I/O: A Flexible parallel-I/O library for heterogeneous computing environment

Tsujita, Yuichi; Imamura, Toshiyuki; Takemiya, Hiroshi*; Yamagishi, Nobuhiro*

Recent Advances in Parallel Virtual Machine and Message Passing Interface, p.288 - 295, 2002/00

An MPI-2 based parallel-I/O library, Stampi-I/O, has been developed using flexible communication infrastructure. In Stampi-I/O almost all MPI-I/O functions have been implemented. We can execute these functions using both local and remote I/O operations with the same application program interface (API) based on MPI-2. In I/O operations using Stampi-I/O, users need not handle any differences in the communication mechanism of computers. We have evaluated performance for primitive functions in Stampi-I/O. Through this test, sufficient performance has been achieved and effectiveness of our flexible implementation has been confirmed.

Journal Articles

Distributed parallel-I/O library for heterogeneous computing environment

Tsujita, Yuichi; Imamura, Toshiyuki; Takemiya, Hiroshi*; Yamagishi, Nobuhiro*

Proceedings of 5th World Multiconference on Systemics, Cybernetics and Informatics (SCI 2001), p.402 - 407, 2001/07

An MPI-2 based distributed parallel-I/O library called Stampi-I/O has been developed using communication infrastructure of Stampi. Stampi is a communication library based on MPI and MPI-2. It has been developed for heterogeneous computing environment as infrastructure of metacomputing. As many applications in computational science handle huge amount of data which one parallel computer can not handle, distributed parallel-I/O libraries have been required for effective handling of such huge data on heterogeneous computing environment. Considering this situation, Stampi-I/O has been designed and developed. In this paper, motivations, architecture and preliminary results of performance measurement of Stampi-I/O are described.

Journal Articles

Implementation of emergency system for radioactive source term estimation on global meta-computing environment and its real-time visualization

Muramatsu, Kazuhiro; Imamura, Toshiyuki; Kitabata, Hideyuki; Kaneko, Isamu; Takemiya, Hiroshi*; Hasegawa, Yukihiro*; Yamagishi, Nobuhiro*; Hirayama, Toshio

Keisan Kogaku Koenkai Rombunshu, 6(1), p.241 - 244, 2001/05

no abstracts in English

Journal Articles

Worldwide metacomputing experiments at SC2000

Imamura, Toshiyuki; Muramatsu, Kazuhiro; Kitabata, Hideyuki*; Kaneko, Isamu*; Yamagishi, Nobuhiro*; Hasegawa, Yukihiro*; Takemiya, Hiroshi*; Hirayama, Toshio

Joho Shori Gakkai Kenkyu Hokoku 2001-ARC-142, p.49 - 54, 2001/03

no abstracts in English

Journal Articles

Evaluation of the resource information prediction in the resource information server

Koide, Hiroshi; Yamagishi, Nobuhiro*; Takemiya, Hiroshi*; Kasahara, Hironori*

Joho Shori Gakkai Rombunshi, 42(3), p.65 - 73, 2001/03

no abstracts in English

Journal Articles

Parallel-I/O implantation in communication library, Stampi, for heterogeneous computing environment

Tsujita, Yuichi; Imamura, Toshiyuki; Takemiya, Hiroshi*; Yamagishi, Nobuhiro*

Joho Shori Gakkai Kenkyu Hokoku 2000-HPC-84, p.43 - 48, 2000/12

no abstracts in English

Journal Articles

Software environment for local area metacomputing

Takemiya, Hiroshi*; Imamura, Toshiyuki; Koide, Hiroshi; Higuchi, Kenji; Tsujita, Yuichi; Yamagishi, Nobuhiro*; Matsuda, Katsuyuki*; Ueno, Koichi*; Hasegawa, Yukihiro*; Kimura, Toshiya; et al.

Proceedings of 4th International Conference on Supercomputing in Nuclear Applications (SNA 2000) (CD-ROM), 16 Pages, 2000/09

no abstracts in English

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