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Ishibashi, Hiroaki*; Hayashi, Aiko*; Shiga, Motoyuki; Tachikawa, Masanori*
ChemPhysChem, 9(3), p.383 - 387, 2008/02
Times Cited Count:24 Percentile:64.37(Chemistry, Physical)no abstracts in English
Yamasaki, Chisato*; Murakami, Katsuhiko*; Fujii, Yasuyuki*; Sato, Yoshiharu*; Harada, Erimi*; Takeda, Junichi*; Taniya, Takayuki*; Sakate, Ryuichi*; Kikugawa, Shingo*; Shimada, Makoto*; et al.
Nucleic Acids Research, 36(Database), p.D793 - D799, 2008/01
Times Cited Count:51 Percentile:71.25(Biochemistry & Molecular Biology)Here we report the new features and improvements in our latest release of the H-Invitational Database, a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of fulllength cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 protein-coding and 642 non-protein-coding loci; 858 transcribed loci overlapped with predicted pseudogenes.
Hayashi, Aiko*; Shiga, Motoyuki; Tachikawa, Masanori*
Molecular Simulation, 33(1-2), p.185 - 188, 2007/02
Times Cited Count:3 Percentile:9.21(Chemistry, Physical)Ab initio path integral molecular dynamics simulation has been performed to investigate the lithium-hydrogen bond and dihydrogen bond of CHLiH complex. It has been found from the simulation that these unusual types of hydrogen bonds have large geometrical isotope effect which is similar to that of the conventional hydrogen bonding.
Hayashi, Aiko*; Shiga, Motoyuki; Tachikawa, Masanori*
Journal of Chemical Physics, 125(20), p.204310_1 - 204310_7, 2006/11
Times Cited Count:20 Percentile:56.31(Chemistry, Physical)In order to investigate the H/D isotope effect on a dihydrogen bonded cation system, we have studied and its isotopomers by path integral molecular dynamics. It is found that the dihydrogen bond can be exchanged by rotation. The deuterated isotopomer (; DD) can exchange the dihydrogen bond more easily than other isotopomers such as (; HH). This unusual isotope effect is ascribed to the "quantum localization" which occurs when the effective energy barrier for the rotational mode becomes higher by the zero point energy of other modes. We also found that the binding energy of dihydrogen bonds for DD species is the smallest among the isotopomers.
Hayashi, Aiko*; Shiga, Motoyuki; Tachikawa, Masanori*
Chemical Physics Letters, 410(1-3), p.54 - 58, 2005/07
Times Cited Count:10 Percentile:33.01(Chemistry, Physical)Hydrogen bond is conventionally a bonding between hydrogen and an atom with high electronegativity such as fluorine, oxygen or nitrogen. A dihydrogen bond is an exceptional case, which is an attractive force between positively and negatively charged hydrogen atoms. In this report, some characters of the dihydrogen bond is studied in detail for the molecular cluster BeHNH using ab initio molecular dynamics simulation.
Kawai, Maki; Kobayashi, Yasuhiko; Hirata, Aiko*; Ono, Yutaka; Watanabe, Hiroshi; Uchimiya, Hirofumi
Plant Biotechnology, 17(4), p.305 - 308, 2000/12
no abstracts in English
Yoshida, Yukari*; Suzuki, Yoshiyuki*; Takeuchi, Aiko*; Hamada, Nobuyuki*; Shirai, Katsuyuki*; Funayama, Tomoo; Sakashita, Tetsuya; Kobayashi, Yasuhiko; Ozawa, Seiji*; Nakano, Takashi*
no journal, ,
no abstracts in English
Yokobori, Shinichi*; Kobayashi, Kensei*; Mita, Hajime*; Yabuta, Hikaru*; Nakagawa, Kazumichi*; Narumi, Issei; Hayashi, Nobuhiro*; Tomita, Kaori*; Kawaguchi, Yuko*; Shimizu, Yasuyuki*; et al.
no journal, ,
no abstracts in English