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Journal Articles

Growth of large protein crystals by a large-scale hanging-drop method

Kakinouchi, Keisuke*; Nakamura, Tsutomu*; Tamada, Taro; Adachi, Hiroaki*; Sugiyama, Shigeru*; Maruyama, Mihoko*; Takahashi, Yoshinori*; Takano, Kazufumi*; Murakami, Satoshi*; Inoue, Tsuyoshi*; et al.

Journal of Applied Crystallography, 43(4), p.937 - 939, 2010/08

 Times Cited Count:4 Percentile:48.38(Chemistry, Multidisciplinary)

A method for growing large protein crystals is described. In this method, a cut pipette tip is used to hang large-scale droplets (maximum volume 200 $$mu$$l) consisting of protein and precipitating agents. A crystal grows at the vapor-liquid interface; thereafter the grown crystal can be retrieved by droplet-droplet contact both for repeated macroseeding and for mounting crystals in a capillary. Crystallization experiments with peroxiredoxin of ${it Aeropyrum pernix}$ K1(thioredoxin peroxidase, ApTPx) and hen egg white lysozyme demonstrated that this large-scale hanging-drop method could produce a large-volume crystal very effectively. A neutron diffraction experiment confirmed that an ApTPx crystal (6.2 mm$$^{3}$$) obtained by this method diffracted to beyond 3.5 ${AA}$ resolution.

Journal Articles

Crystal growth procedure of HIV-1 protease-inhibitor KNI-272 complex for neutron structural analysis at 1.9 ${AA}$ resolution

Shimizu, Noriko*; Sugiyama, Shigeru*; Maruyama, Mihoko*; Takahashi, Yoshinori*; Adachi, Motoyasu; Tamada, Taro; Hidaka, Koshi*; Hayashi, Yoshio*; Kimura, Toru*; Kiso, Yoshiaki*; et al.

Crystal Growth & Design, 10(7), p.2990 - 2994, 2010/06

 Times Cited Count:11 Percentile:72.07(Chemistry, Multidisciplinary)

We report crystal growth of human immunodeficiency virus 1 protease (HIV PR) in a complex with its inhibitor KNI-272 by six different methods. Comparative analysis indicates that top-seeded solution growth (TSSG) and TSSG combined with the floating and stirring technique (TSSG-FAST) are efficient strategies for rapidly obtaining large single crystals and effectively preventing polycrystallization of the seed crystal. Neutron diffraction analysis confirmed that the crystalobtained by TSSG is a high-quality single crystal. Furthermore, crystal shape was observed to be influenced by solution flow, suggesting that the degree of supersaturation significantly affects the crystal growth direction of HIV PR complex. This finding implies that the shape of the HIV PR complex crystal might be controlled by the solution flow rate.

Journal Articles

Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography

Adachi, Motoyasu; Ohara, Takashi; Kurihara, Kazuo; Tamada, Taro; Honjo, Eijiro; Okazaki, Nobuo; Arai, Shigeki; Shoyama, Yoshinari; Kimura, Kaname*; Matsumura, Hiroyoshi*; et al.

Proceedings of the National Academy of Sciences of the United States of America, 106(12), p.4641 - 4646, 2009/03

 Times Cited Count:111 Percentile:90.76(Multidisciplinary Sciences)

To further understand the catalytic mechanism and inhibitor recognition of HIV-1 protease, we need to determine the locations of key hydrogen atoms in the catalytic aspartates Asp25 and Asp125. The structure of HIV-1 protease in complex with transition-state analog KNI-272 was determined by combined neutron crystallography at 1.9 ${AA}$ resolution and X-ray crystallography at 1.4 ${AA}$ resolution. The resulting structural data shows that the catalytic residue Asp25 is protonated and that Asp125 is deprotonated. The proton on Asp25 makes a hydrogen bond with the carbonyl group of the allophenylnorstatine group in KNI-272. The deprotonated Asp125 bonds to the hydroxyl proton of Apns. The results provide direct experimental evidence for proposed aspects of the catalytic mechanism of HIV-1 protease; and can therefore contribute substantially to the development of specific inhibitors for therapeutic application.

Journal Articles

Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272

Matsumura, Hiroyoshi*; Adachi, Motoyasu; Sugiyama, Shigeru*; Okada, Shino*; Yamakami, Megumi*; Tamada, Taro; Hidaka, Koshi*; Hayashi, Yoshio*; Kimura, Toru*; Kiso, Yoshiaki*; et al.

Acta Crystallographica Section F, 64(11), p.1003 - 1006, 2008/11

 Times Cited Count:17 Percentile:77.99(Biochemical Research Methods)

This paper reports the crystallization and preliminary neutron diffraction measurements of HIV-1 protease, a potential target for anti-HIV therapy, complexed with an inhibitor (KNI-272). The aim of this neutron diffraction study is to obtain structural information about the H atoms and to determine the protonation states of the residues within the active site. The crystal was grown to a size of 1.4 mm$$^{3}$$ by repeated macroseeding and a slow-cooling method using a two-liquid system. Neutron diffraction data were collected at room temperature using a BIX-4 diffractometer at the JRR-3 research reactor of the Japan Atomic Energy Agency (JAEA). The data set was integrated and scaled to 2.3 ${AA}$ resolution in space group P2(1)2(1)2, with unit-cell parameters a = 59.5, b = 87.4, c = 46.8 ${AA}$.

Journal Articles

Concept of transmutation experimental facility

Oigawa, Hiroyuki; Sasa, Toshinobu; Kikuchi, Kenji; Nishihara, Kenji; Kurata, Yuji; Umeno, Makoto*; Tsujimoto, Kazufumi; Saito, Shigeru; Futakawa, Masatoshi; Mizumoto, Motoharu; et al.

Proceedings of 4th International Workshop on the Utilisation and Reliability of High Power Proton Accelerators, p.507 - 517, 2005/11

Under the framework of J-PARC, the Japan Atomic Energy Research Institute (JAERI) plans to construct the Transmutation Experimental Facility (TEF). The TEF consists of two facilities: the Transmutation Physics Experimental Facility (TEF-P) and the ADS Target Test Facility (TEF-T). The TEF-P is a critical facility which can accept a 600 MeV - 10 W proton beam. The TEF-T is a material irradiation facility using a 600 MeV - 200 kW proton beam, where a Pb-Bi target is installed, but neutron multiplication by nuclear fuel will not be attempted. This report describes the purposes of the facility, the present status of the conceptual design, and the expected experiments to be performed.

Journal Articles

Design study around beam window of ADS

Oigawa, Hiroyuki; Tsujimoto, Kazufumi; Kikuchi, Kenji; Kurata, Yuji; Sasa, Toshinobu; Umeno, Makoto*; Nishihara, Kenji; Saito, Shigeru; Mizumoto, Motoharu; Takano, Hideki*; et al.

Proceedings of 4th International Workshop on the Utilisation and Reliability of High Power Proton Accelerators, p.325 - 334, 2005/11

The Japan Atomic Energy Research Institute (JAERI) is conducting the research and development (R&D) on the Accelerator-Driven Subcritical System (ADS) for the effective transmutation of minor actinides (MAs). The ADS proposed by JAERI is the 800 MWth, Pb-Bi cooled, tank-type subcritical reactor loaded with (MA+Pu) nitride fuel. The Pb-Bi is also used as the spallation target. In this study, the feasibility of the ADS was discussed with putting the focus on the design around the beam window. The partition wall was placed between the target region and the ductless-type fuel assemblies to keep the good cooling performance for the hot-spot fuel pin. The flow control nozzle was installed to cool the beam window effectively. The thermal-hydraulic analysis showed that the maximum temperature at the outer surface of the beam window could be repressed below 500 $$^{circ}$$C even in the case of the maximum beam power of 30 MW. The stress caused by the external pressure and the temperature distribution of the beam window was also below the allowable limit.

JAEA Reports

Conceptual study of transmutation experimental facility, 2; Study on ADS target test facility

Sasa, Toshinobu; Umeno, Makoto*; Mizubayashi, Hiroshi*; Mori, Keijiro*; Futakawa, Masatoshi; Saito, Shigeru; Kai, Tetsuya; Nakai, Kimikazu*; Zako, Akira*; Kasahara, Yoshiyuki*; et al.

JAERI-Tech 2005-021, 114 Pages, 2005/03

JAERI-Tech-2005-021.pdf:9.66MB

To perform the research and development for accelerator-driven system (ADS), Japan Atomic Energy Research Institute (JAERI) plans to build a Transmutation Experimental Facility under the JAERI-KEK joint J-PARC program. Transmutation Experimental Facility consists of two buildings, Transmutation Physics Experimental Facility to make reactor physics experiment with subcritical core, and ADS Target Test Facility for the preparation of irradiation database for various structural materials. In this report, purpose to build, experimental schedule, and design study of the ADS target test facility with drawer type spallation target are summarized.

Journal Articles

R&D activities on accelerator-driven transmutation system in JAERI

Oigawa, Hiroyuki; Tsujimoto, Kazufumi; Kikuchi, Kenji; Kurata, Yuji; Sasa, Toshinobu; Umeno, Makoto*; Saito, Shigeru; Nishihara, Kenji; Mizumoto, Motoharu; Takano, Hideki*; et al.

EUR-21227 (CD-ROM), p.483 - 493, 2005/00

JAERI is conducting the study on the dedicated transmutation system using the accelerator driven subcritical system (ADS). A subcritical reactor with the thermal power of 800 MW has been proposed. Many research and development activities including the conceptual design study are under way and planned at JAERI to examine the feasibility of the ADS. In the field of the proton accelerator, a superconducting LINAC is being developed. In the field of the spallation target using lead-bismuth eutectic (LBE), material corrosion, thermal-hydraulics, polonium behavior, and irradiation effect on materials are being studied. Moreover, in the framework of the J-PARC project, JAERI plans to construct the Transmutation Experimental Facility (TEF) to study the feasibility of the ADS using a high-energy proton beam and nuclear fuel and to establish the technology for the LBE spallation target and relevant materials.

Journal Articles

Research and development on accelerator-driven transmutation system at JAERI

Sasa, Toshinobu; Oigawa, Hiroyuki; Tsujimoto, Kazufumi; Nishihara, Kenji; Kikuchi, Kenji; Kurata, Yuji; Saito, Shigeru; Futakawa, Masatoshi; Umeno, Makoto*; Ouchi, Nobuo; et al.

Nuclear Engineering and Design, 230(1-3), p.209 - 222, 2004/05

 Times Cited Count:33 Percentile:88.2(Nuclear Science & Technology)

JAERI carries out research and development on accelerator-driven system (ADS) to transmute minor actinides and long-lived fission products. The system is composed of high intensity proton accelerator, lead-bismuth spallation target and lead-bismuth cooled subcritical core with nitride fuel. About 2,500 kg of minor actinide is loaded into the subcritical core. Annual transmutation amount using this system is 250 kg with 800MW of thermal output. A superconducting linear accelerator with the beam power of 30MW is connected to drive the subcritical core. Many research and development activities are under way and planned in the fields of subcritical core design, spallation target technology, lead-bismuth handling technology, accelerator development, and minor actinide fuel development. Especially, to study and evaluate the feasibility of the ADS from physics and engineering aspects, the Transmutation Experimental Facility (TEF) is proposed under a framework of the High-Intensity Proton Accelerator Project.

Journal Articles

Research and development activities for accelerator driven system at JAERI

Tsujimoto, Kazufumi; Sasa, Toshinobu; Nishihara, Kenji; Oigawa, Hiroyuki; Takano, Hideki*

Proceedings of International Conference on Physics of Fuel Cycles and Advanced Nuclear Systems; Global Developments (PHYSOR 2004) (CD-ROM), 8 Pages, 2004/04

The Japan Atomic Energy Research Institute (JAERI) is developing an Accelerator Driven System (ADS) for transmutation of nuclear waste such as minor actinide (MA) and long-lived fission product (LLFP). To study and evaluate the feasibility of ADS by physical and engineering viewpoints, the Transmutation Experimental Facility (TEF) is proposed under a framework of J-PARC (Japan Proton Accelerator Research Complex) project. The TEF consists of two facilities named as Transmutation Physics Experimental Facility (TEF-P) and ADS Target Test Facility (TEF-T). The TEF-P consists of a zero-power critical assembly which is operated with a low power proton beam to research the reactor physics and the controllability of ADS. The TEF-T is a facility for material irradiation and partial mockup of beam window which can accept a maximum 600MeV-200kW proton beam into the Pb-Bi eutectic target. The purposes, experimental items and the specifications of the facilities are described.

Journal Articles

Neutronics design for lead-bismuth cooled accelerator-driven system for transmutation of minor actinide

Tsujimoto, Kazufumi; Sasa, Toshinobu; Nishihara, Kenji; Oigawa, Hiroyuki; Takano, Hideki

Journal of Nuclear Science and Technology, 41(1), p.21 - 36, 2004/01

 Times Cited Count:140 Percentile:99.24(Nuclear Science & Technology)

Neutronics design study was performed for lead-bismuth cooled accelerator-driven system (ADS) to transmute minor actinides. Early study for ADS indicated two problems: a large burnup reactivity swing and a significant peaking factor. To solve these problems, effect of design parameters on neutronics characteristics were searched. Parametric survey calculations were performed considering fuel cycle consisting of burnup and recycle. The results showed that burnup reactivity swing depends on the plutonium fraction in the initial fuel loading, and the lead-bismuth buffer region and the two-zone loading were effective for solving the problems. Moreover, an optimum value for the effective multiplication factor was also evaluated using reactivity coefficients. From the result, the maximum allowable value of the effective multiplication factor for a practical ADS can be set at 0.97. Consequently, a new core concept combining the buffer region and the two-zone loading was proposed base on the results of the parametric survey.

JAEA Reports

Conceptual study of transmutation experimental facility, 4; Study on safety analysis of transmutation physics experiment facility

Tsujimoto, Kazufumi; Tazawa, Yujiro; Oigawa, Hiroyuki; Sasa, Toshinobu; Takano, Hideki

JAERI-Tech 2003-085, 158 Pages, 2003/11

JAERI-Tech-2003-085.pdf:7.79MB

A safety analysis was performed for the Transmutation Physics Experiment Facility which was to research and develop the reactor physics aspects of the nuclear transmutation technology using the accelerator driven subcritical system. Design policies were evaluated for design of each equipment and system which had important role from view point of safety. Classification of safety class for reactor building, system, and equipment was also reconsidered. Based on the results of safety design policy, acceptance criteria for safety evaluation were reestablished and preliminary analysis were performed. Public exposure by the accident for site appropriateness assessment was evaluated based on revised guidelines in safety evaluation contained in the 1990 Recommendations of ICRP. A recritical event was analyzed by utilizing the newest knowledge for core disruptive accident and calculation code as the beyond design basis accident. The analytical results showed that the isolation capability of the container buildings was ensured against the recritical accident.

Journal Articles

Research and development on accelerator-driven transmutation system at JAERI

Sasa, Toshinobu; Oigawa, Hiroyuki; Tsujimoto, Kazufumi; Nishihara, Kenji; Kikuchi, Kenji; Kurata, Yuji; Saito, Shigeru; Futakawa, Masatoshi; Umeno, Makoto*; Ouchi, Nobuo; et al.

Proceedings of 11th International Conference on Nuclear Engineering (ICONE-11) (CD-ROM), 9 Pages, 2003/04

JAERI carries out research and development on accelerator-driven system (ADS) to transmute minor actinides and long-lived fission products in high-level radioactive waste. The system is composed of high intensity proton accelerator, lead-bismuth spallation target and lead-bismuth cooled subcritical core with nitride fuel. About 2500 kg of minor actinide is loaded into the subcritical core. Annual transmutation amount using this system is 250 kg with 800MW of thermal output. A superconducting linear accelerator with the beam power of 20 - 30MW is connected to drive the subcritical core. The nitride fuel without uranium, such as (Np, Am, Pu)N, is selected. The fuel irradiated in the ADS is reprocessed by pyrochemical process followed by the re-fabrication of the fuel. Many research and development activities are under way. Especially, to study and evaluate the feasibility of the ADS from physics and engineering aspects, the Transmutation Experimental Facility (TEF) is proposed under a framework of the High-Intensity Proton Accelerator Project.

Journal Articles

Research and development program on accelerator driven system in JAERI

Oigawa, Hiroyuki; Ouchi, Nobuo; Kikuchi, Kenji; Tsujimoto, Kazufumi; Kurata, Yuji; Sasa, Toshinobu; Takano, Hideki; Nishihara, Kenji; Saito, Shigeru; Futakawa, Masatoshi; et al.

Proceedings of GLOBAL2003 Atoms for Prosperity; Updating Eisenhower's Global Vision for Nuclear Energy (CD-ROM), p.1374 - 1379, 2003/00

JAERI is developing an Accelerator Driven System (ADS) for transmutation of nuclear waste such as minor actinide and long-lived fission product. To acquire the knowledge and the elemental technology that are necessary for the validation of engineering feasibility of ADS, JAERI has started a comprehensive research and development (R&D) program since 2002. The first stage of the program will be continued for three years. The program is conducted by JAERI with many institutes, universities and private companies. Items of R&D are concentrated on three technical areas peculiar to ADS: (1) a superconducting linear accelerator, (2) lead-bismuth eutectic as spallation target and core coolant, and (3) subcritical core design and physics. The outline and the preliminary results of the program are summarized in the present report.

Journal Articles

Research and development on accelerator-driven system for transmutation of long-lived nuclear waste at JAERI

Oigawa, Hiroyuki; Sasa, Toshinobu; Takano, Hideki; Tsujimoto, Kazufumi; Nishihara, Kenji; Kikuchi, Kenji; Kurata, Yuji; Saito, Shigeru; Futakawa, Masatoshi; Umeno, Makoto*; et al.

Proceedings of 13th Pacific Basin Nuclear Conference (PBNC 2002) (CD-ROM), 8 Pages, 2002/10

To reduce the burden on the final disposal of the nuclear waste, the Acclelerator-Driven System (ADS) which can transmute minor actinides efficiently has been studied in JAERI. The proposed ADS design is an 800MWth subcritical core with lead-bismuth coolant and minor-actinide nitride fuel driven by a neutron source of a superconductivity linear accelerator with 30MW and a lead-bismuth spallation target. To realize the ADS, many research and development are under way in the fields of the accelerator, the spallation target and the nitride fuel. Moreover, a new experimental facility, the Transmutation Experimental Facility, is proposed under a framework of the High-Intensity Proton Accelerator Project to study the feasibility of the ADS from physics and engineering aspects.

Journal Articles

A Neutronics and burnup analysis of the accelerator-driven transmutation system with different cross section libraries

Sasa, Toshinobu; Tsujimoto, Kazufumi; Kaneko, Kunio*; Takano, Hideki

Journal of Nuclear Science and Technology, 39(Suppl.2), p.1183 - 1186, 2002/08

no abstracts in English

Journal Articles

Code development for the design study of the OMEGA program accelerator-driven transmutation systems

Sasa, Toshinobu; Tsujimoto, Kazufumi; Takizuka, Takakazu; Takano, Hideki

Nuclear Instruments and Methods in Physics Research A, 463(3), p.495 - 504, 2001/05

 Times Cited Count:15 Percentile:71.26(Instruments & Instrumentation)

no abstracts in English

Journal Articles

Transmutation of long-lived radioactive waste based on double-strata concept

Takano, Hideki; Nishihara, Kenji; Tsujimoto, Kazufumi; Sasa, Toshinobu; Oigawa, Hiroyuki; Takizuka, Takakazu

Progress in Nuclear Energy, 37(1-4), p.371 - 376, 2000/12

 Times Cited Count:17 Percentile:72.09(Nuclear Science & Technology)

no abstracts in English

JAEA Reports

Conceptual study of transmutation experimental facility, 1; Outline of transmutation physics experiment facility

Oigawa, Hiroyuki; Ikeda, Yujiro; Sasa, Toshinobu; Meigo, Shinichiro; Takano, Hideki; Tsujimoto, Kazufumi; Nishihara, Kenji

JAERI-Tech 2000-062, 64 Pages, 2000/09

JAERI-Tech-2000-062.pdf:4.25MB

no abstracts in English

Journal Articles

The Current status of R&D for accelerator-driven system at JAERI

Sasa, Toshinobu; Oigawa, Hiroyuki; Tsujimoto, Kazufumi; Nishihara, Kenji; Umeno, Makoto*; Takano, Hideki*

Proceedings of International Conference on Global Environment and Advanced Nuclear Power Plants (GENES4/ANP 2003) (CD-ROM), 8 Pages, 2000/09

Japan Atomic Energy Research Institute (JAERI) performs research and development for accelerator-driven transmutation systems to improve the environmental impact and increase a capacity of waste disposal plant. The system consists of a superconducting proton LINAC, Pb-Bi eutectic spallation target and Pb-Bi cooled subcritical core. Thermal output of the system is 800MW by injection of the proton beam with the power of 20 to 30MW and then, about 250kg of minor actinides can be transmuted annually. To study and evaluate the feasibility of ADS by a physical and an engineering viewpoint, the Transmutation Experimental Facility is proposed under a framework of J-PARC project. In the presentation, the R&D activities by the contract between the Ministry of Education, Culture, Sports, Science and Technology will be presented.

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