Origin of dissolved organic matter in deep groundwater of marine deposits and its implication for metal binding

Saito, Takumi*; Nishi, Shusaku*; Amano, Yuki; Beppu, Hikari*; Miyakawa, Kazuya

ACS ES&T Water (Internet), 3(12), p.4103 - 4112, 2023/12

https://doi.org/10.1021/acsestwater.3c00505

Anaerobic methane-oxidizing activity in a deep underground borehole dominantly colonized by Methanoperedenaceae

Nishimura, Hiroki*; Kozuka, Mariko*; Fukuda, Akari*; Ishimura, Toyoho*; Amano, Yuki; Beppu, Hikari*; Miyakawa, Kazuya; Suzuki, Yohei*

Environmental Microbiology Reports (Internet), 15(3), p.197 - 205, 2023/06

https://doi.org/10.1111/1758-2229.13146

The family Methanoperedenaceae archaea mediate anaerobic oxidation of methane (AOM). We newly developed a high-pressure laboratory incubation system and investigated groundwater from 214- and 249-m deep boreholes at Horonobe Underground Research Laboratory, Japan, where the high and low abundances of Methanoperedenaceae archaea have been revealed, respectively. We incubated the samples amended with or without amorphous Fe(III) and C-labelled methane at an in-situ pressure of 1.6 MPa. After three to seven-day incubation, AOM activities were not detected from the 249-m sample but from the 214-m sample. The AOM rates were 93.740.6 and 27.737.5 nM/day with and without Fe(III) amendment. Suspended particulates were not visible in the 249-m sample on the filter, while they were abundant and contained amorphous Fe(III) and Fe(III)-bearing phyllosilicates in the 214-m sample. This supports the in-situ activity of Fe(III)-dependent AOM in the deep subsurface borehole.

A Widespread group of large plasmids in methanotrophic archaea

Schoelmerich, M. C.*; Oubouter, H. T.*; Sachdeva, R.*; Penev, P. I.*; Amano, Yuki; West-Roberts, J.*; Welte, C. U.*; Banfield, J. F.*

Nature Communications (Internet), 13, p.7085_1 - 7085_11, 2022/11

https://doi.org/10.1038/s41467-022-34588-9

Evolution of the reaction and alteration of mudstone with ordinary Portland cement leachates; Sequential flow experiments and reactive-transport modelling

Bateman, K.; Murayama, Shota*; Hanamachi, Yuji*; Wilson, J.*; Seta, Takamasa*; Amano, Yuki; Kubota, Mitsuru*; Ouchi, Yuji*; Tachi, Yukio

Minerals (Internet), 11(9), p.1026_1 - 1026_23, 2021/09

https://doi.org/10.3390/min11091026

Reaction and alteration of mudstone with Ordinary Portland Cement and Low Alkali Cement pore fluids

Bateman, K.; Amano, Yuki; Kubota, Mitsuru*; Ouchi, Yuji*; Tachi, Yukio

Minerals (Internet), 11(6), p.588_1 - 588_19, 2021/06

https://doi.org/10.3390/min11060588

Groundwater are metabolically diverse compared to gut microbiome and some have a novel nitrogenase paralog

Mheust, R.*; Castelle, C. J.*; Matheus Carnevali, P. B.*; Farag, I. F.*; He, C.*; Chen, L.-X.*; Amano, Yuki; Hug, L. A.*; Banfield, J. F.*

ISME Journal, 14(12), p.2907 - 2922, 2020/12

https://doi.org/10.1038/s41396-020-0716-1

Hydrochemical investigation at the Mizunami Underground Research Laboratory; Compilation of groundwater chemistry data in the Mizunami group and the Toki granite (fiscal year 2018)

Fukuda, Kenji; Watanabe, Yusuke; Murakami, Hiroaki; Amano, Yuki; Aosai, Daisuke*; Kumamoto, Yoshiharu*; Iwatsuki, Teruki

JAEA-Data/Code 2019-019, 74 Pages, 2020/03

JAEA-Data-Code-2019-019.pdf:3.53MB

Japan Atomic Energy Agency has been investigating groundwater chemistry to understand the influence of excavation and maintenance of underground facilities as part of the Mizunami Underground Research Laboratory (MIU) Project in Mizunami, Gifu, Japan. In this report, we compiled data of groundwater chemistry and microbiology obtained at the MIU in the fiscal year 2018. In terms of ensuring traceability of data, basic information (e.g. sampling location, sampling time, sampling method and analytical method) and methodology for quality control are described.

Genetic survey of indigenous microbial eukaryotic communities, mainly fungi, in sedimentary rock matrices of deep terrestrial subsurface

Saito, Yoshimoto*; Hirano, Shinichi*; Nagaoka, Toru*; Amano, Yuki

Ecological Genetics and Genomics, 12, p.100042_1 - 100042_9, 2019/10

https://doi.org/10.1016/j.egg.2019.100042

Culture-independent molecular techniques enable us to analyze microflora in various environments. Many uncultured prokaryotes have been detected by the molecular methods from extreme environments, including anaerobic, no light, high-pressure, and high temperature. Recently, microbial eukaryotes were also detected in deep-sea environments, suggesting that microbial eukaryotes can adapt to a wider range of environments than previously thought. Here, we performed a culture-independent analysis of eukaryotes from approximately -250 m depth in the Horonobe Underground Research Laboratory at Horonobe, Japan. Our results indicate that fungi are the dominant eukaryotic flora in deep sedimentary rocks of Horonobe. We detected a wide range of species, including Zygomycete, Basidiomycete, and Ascomycete fungi from the rocks. This study is the first report of eukaryotic diversity in deep subsurface sedimentary rocks.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

Matheus Carnevali, P. B.*; Schulz, F.*; Castelle, C. J.*; Kantor, R. S.*; Shih, P.*; Sharon, I.*; Santini, J.*; Olm, M. R.*; Amano, Yuki; Thomas, B. C.*; et al.

Nature Communications (Internet), 10, p.463_1 - 463_15, 2019/01

https://doi.org/10.1038/s41467-018-08246-y

Evaluation of hydrogeochemical processes provoked by tunnel excavation and closure based on simulated experiment in a mock-up test drift

Hayashida, Kazuki; Kato, Toshihiro*; Kubota, Mitsuru*; Murakami, Hiroaki; Amano, Yuki; Iwatsuki, Teruki

Chikyu Kagaku, 52(1), p.55 - 71, 2018/03

https://doi.org/10.14934/chikyukagaku.52.55

In this study, the simulated experimental drift was constructed in the granite of 500 m depth at Mizunami Underground Research Laboratory, and the hydrochemical process after the drift closure was observed. The groundwater chemistry around the drift changed with the change of the groundwater flow in the fractures when the gallery was constructed. The redox potential increased due to the infiltration of oxygen from the drift into the rock. After closing the drift, the redox potential of the groundwater plunged due to microbial activity, while the groundwater became alkalized conditon due to the influence of cement material such as shotcrete. The amount of cement material consumed for this alkalization was small, and it was considered that its influence would last long in accordance with the amount of cement used.