Adsorption structures and bonding states of cesium and barium adsorbed on various sites of vermiculite

Yamaguchi, Akiko; Okumura, Masahiko; Kawamura, Naomi*; Takahashi, Yoshio*

Science of the Total Environment, 964, p.178585_1 - 178585_13, 2025/02

https://doi.org/10.1016/j.scitotenv.2025.178585

There are many unresolved issues in the adsorption reactions of clay minerals. One of the reasons is the existence of multiple adsorption sites. It is known that the contribution of each adsorption site depends on the concentration of adsorbed ions, and there is a challenge in comprehensively correlate the results of atomic-level simulations that employ limited number of atoms and inevitably deal high-concentration samples with actual environmental samples where concentrations are orders of magnitude lower. In this study, we combined experiments using synchrotron radiation and first-principles calculations to comprehensively elucidate the systematic changes in the local structure of adsorption sites and adsorbed ions based on the adsorption concentration at the atomic level, and demonstrated that the interaction between adsorbed ions and clay minerals involves ionic bonding.

Characterization of mineral composition using PIXE and EXAFS analyses to elucidate the Barium adsorption mechanism

Oguri, Kaori; Hagura, Naoto*; Yamaguchi, Akiko; Okumura, Masahiko; Matsuura, Haruaki*; Tsunashima, Yasumichi; Aoki, Katsumi; Arai, Yoichi; Watanabe, So

Nuclear Instruments and Methods in Physics Research B, 556, p.165516_1 - 165516_8, 2024/11

https://doi.org/10.1016/j.nimb.2024.165516

Ningyo-toge is the uranium mine that has been operated in Japan. Various radioactive elements such as Uranium (U), and Radium (Ra) are still present in the mine ground water with very small amount, and behavior of those elements is not fully understood. In this study, we investigated the composition of metal oxides and clay minerals in a soil of slag deposit at the mine, and systematics of adsorption structure of various ions were examined. Identifying the composition and chemical forms of minerals present in the soil of slag can provide useful information for the safety assessment and evaluation of influence on the surrounding environment.

Globular pattern formation of hierarchical ceria nanoarchitectures

Aoyagi, Noboru; Motokawa, Ryuhei; Okumura, Masahiko; Ueda, Yuki; Saito, Takumi*; Nishitsuji, Shotaro*; Taguchi, Tomitsugu*; Yomogida, Takumi; Sazaki, Gen*; Ikeda, Atsushi

Communications Chemistry (Internet), 7, p.128_1 - 128_13, 2024/06

https://doi.org/10.1038/s42004-024-01199-y

Machine learning molecular dynamics reveals the structural origin of the first sharp diffraction peak in high-density silica glasses

Kobayashi, Keita; Okumura, Masahiko; Nakamura, Hiroki; Itakura, Mitsuhiro; Machida, Masahiko; Urata, Shingo*; Suzuya, Kentaro

Scientific Reports (Internet), 13, p.18721_1 - 18721_12, 2023/11

https://doi.org/10.1038/s41598-023-44732-0

The first sharp peak diffraction peak (FSDP) in the structure factor of amorphous materials is thought to reflect the medium-range order structure in amorphous materials, and the structural origin of the FSDP has been a subject of ongoing debate. In this study, we employed machine learning molecular dynamics (MLMD) with nearly first-principles calculation accuracy to investigate the structural origin of the FSDP in high-density silica glass. First, we successfully reproduced various experimental data of high-density silica glass using MLMD. Furthermore, we revealed that the development (or reduction) of the FSDP in high-density silica glass is characterized by the deformation behavior of ring structures in Si-O covalent bond networks under compression.

Mineralogical factors causing underestimation of values calculated from radiocesium interception potential

Uno, Koichiro*; Nakao, Atsushi*; Okumura, Masahiko; Yamaguchi, Akiko; Kogure, Toshihiro*; Yanai, Junta*

Nihon Dojo Hiryo Gaku Zasshi, 94(5), p.376 - 384, 2023/10

https://doi.org/10.20710/dojo.94.5_376

Radiocesium interception potential (RIP) has been widely used as a quantitative indicator of cesium (Cs) adsorption capacity of soil, but it has been found that RIP does not always correlate with the distribution coefficient () of Cs in the actual environment. In order to clarify the cause of this discrepancy, we measured Kd using more realistic solutions, compared it with RIP, and evaluated the mineral structure. As a result, it was found that the concentration of competing cations, such as potassium and ammonium ions, and the structural change of the mineral itself are important.

Dynamic interaction between dislocations and obstacles in BCC iron based on atomic potentials derived using neural networks

Mori, Hideki*; Tsuru, Tomohito; Okumura, Masahiko; Matsunaka, Daisuke*; Shiihara, Yoshinori*; Itakura, Mitsuhiro

Physical Review Materials (Internet), 7(6), p.063605_1 - 063605_8, 2023/06

https://doi.org/10.1103/PhysRevMaterials.7.063605

The introduction of obstacles (e.g., precipitates) for controlling dislocation motion in molecular structures is a prevalent method for designing the mechanical strength of metals. Owing to the nanoscale size of the dislocation core ( 1 nm), atomic modeling is required to investigate the interactions between the dislocation and obstacles. However, conventional empirical potentials are not adequately accurate, in contrast to the calculations based on density functional theory (DFT). Therefore, the atomic-level details of the interactions between the dislocations and obstacles remain unclarified. To this end, this study applied an artificial neural network (ANN) framework to construct an atomic potential by leveraging the high accuracy of DFT. Using the constructed ANN potential, we investigated the dynamic interaction between the edge dislocation and obstacles in BCC iron. When the dislocation crossed the void, an ultrasmooth and symmetric half-loop was observed for the bowing-out dislocation. Except for the screw dislocation, the Peierls stress of all the dislocations predicted using the ANN was less than 100 MPa. More importantly, the results confirmed the formation of an Orowan loop in the interaction between a rigid sphere and dislocation. Furthermore, we discovered a phenomenon in which the Orowan loop disintegrated into two small loops during its interaction with the rigid sphere and dislocation.

Machine learning potentials of kaolinite based on the potential energy surfaces of GGA and meta-GGA density functional theory

Kobayashi, Keita; Yamaguchi, Akiko; Okumura, Masahiko

Applied Clay Science, 228, p.106596_1 - 106596_11, 2022/10

https://doi.org/10.1016/j.clay.2022.106596

no abstracts in English

Extended X-ray absorption fine structure spectroscopy measurements and molecular dynamics simulations reveal the hydration structure of the radium(II) ion

Yamaguchi, Akiko; Nagata, Kojiro*; Kobayashi, Keita; Tanaka, Kazuya; Kobayashi, Toru; Tanida, Hajime; Shimojo, Kojiro; Sekiguchi, Tetsuhiro; Kaneta, Yui; Matsuda, Shohei; et al.

iScience (Internet), 25(8), p.104763_1 - 104763_12, 2022/08

https://doi.org/10.1016/j.isci.2022.104763

no abstracts in English

Investigation of hydration and adsorption structures on clay minerals of radium by EXAFS

Yamaguchi, Akiko; Nagata, Kojiro*; Tanaka, Kazuya; Kobayashi, Keita; Kobayashi, Toru; Shimojo, Kojiro; Tanida, Hajime; Sekiguchi, Tetsuhiro; Kaneta, Yui; Matsuda, Shohei; et al.

Hosha Kagaku, (45), p.28 - 30, 2022/03

no abstracts in English

Computational science studies on radiocesium adsorption on clay minerals

Okumura, Masahiko

Chikyu Kagaku, 55(4), p.110 - 121, 2021/12

https://doi.org/10.14934/chikyukagaku.55.110

no abstracts in English