検索対象:     
報告書番号:
※ 半角英数字
 年 ~ 
 年

Molecular dynamics of 8-oxoguanine lesioned B-DNA molecule; Structure and energy analysis

8-oxoguanin損傷を持つB-DNA分子構造の分子動力学計算とエネルギー解析

Pinak, M.; O'Neill, P.*; 藤本 浩文; 根本 俊行*

Pinak, M.; O'Neill, P.*; Fujimoto, Hirofumi; Nemoto, Toshiyuki*

酸化損傷を受けたDNAの構造とエネルギーの変化そしてDNAと修復酵素の複合体形成の動的過程を明らかにするためにDNA突然変異源となる酸化損傷7,8-dihydro-8-oxoguanine(8-oxoG)とその修復酵素human oxoguanine glycosylase 1(hOGG1)を生理的水溶液環境下に配置しmultiple nanosecond moleculardynamics simulationを行った。その結果、DNA-酵素複合体において、N末端のアルギニン324が8-oxoGヌクレオチドのホスホジエステル結合に接近しアミノ酸と損傷部位が化学反応を行えることがわかった。DNA損傷の認識、すなわち修復酵素による損傷部位の認識とDNA-酵素の安定な複合体の形成は、その後の修復プロセスを正常に進めるために必須の条件である。

The multiple nanosecond molecular dynamics simulations of DNA mutagenic oxidative lesion - 7,8-dihydro-8-oxoguanine (8-oxoG), complexed with the repair enzyme - human oxoguanine glycosylase 1 (hOGG1) in a physiological aqueous environment, were performed in order to describe the structural and energy changes in DNA and the dynamical process of DNA-enzyme complex formation. In complex the N-terminus of arginine 324 was found located close to the phosphodiester bond of the nucleotide with 8-oxoG enabling chemical reaction(s) between the amino acid and the lesion. The recognition of lesion on DNA, its recognition by repair enzyme and the formation of stable DNA-enzyme complex are necessary conditions for the onset of the successful enzymatic repair process.

Access

:

- Accesses

InCites™

:

Altmetrics

:

[CLARIVATE ANALYTICS], [WEB OF SCIENCE], [HIGHLY CITED PAPER & CUP LOGO] and [HOT PAPER & FIRE LOGO] are trademarks of Clarivate Analytics, and/or its affiliated company or companies, and used herein by permission and/or license.